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ProteomicsB12-ABP labeling of Bacteroides thetaiotaomicron
Proteomic data from B. theta probed with B12-ABP; treated with B12-ABP or CNB12
ORGANISM(S): Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) 
2022-01-11 | PXD015052 | Pride
B12-abp Click chemistry 
UnknownA Cobalamin Activity-Based Probe Enables Microbial Cell Growth and Finds New Cobalamin-Protein Interactions across Domains.
Not available
S-EPMC6121979 | biostudies-literature
ProteomicsNew Roles for Vitamin B12 Regulation
Elucidation of new roles for vitamin B12 in regulation of folate, ubiquinone, and methionine metabolism
ORGANISM(S): Halomonas sp. HL-48 environmental samples 
2018-10-22 | PXD005723 | Pride
Abp Proteomics B12 
TranscriptomicsEffects of an antipsychotic (Olanzapine) involves alterations in gene specific DNA methylation
Antipsychotic drugs are commonly used to treat psychosis, mood disorders, and anxiety. While there is indirect evidence that some component of the antipsychotic effect of these drugs may involve modulation of dopamine transmission, their mechanism of action is poorly understood. We hypothesized that...
ORGANISM(S): Rattus norvegicus 
2013-11-22 | E-GEOD-52615 | biostudies-arrayexpress
GenomicsGenomic targets sites of the Candida glabrata transcription factor Pdr1
Pdr1 is the major regulator of azole resistance in the fungal pathogen Candida glabrata. Earlier experiments demonstrated that expression of Pdr1 itself is increased when cells lose their mitochondrial genome (rho0). Here we use chromatin immunoprecipitation coupled with highthroughput sequencing ...
ORGANISM(S): Candida glabrata CBS 138 
2014-09-12 | E-GEOD-59839 | biostudies-arrayexpress
TranscriptomicsSEQC Toxicogenomics Study: RNA-Seq data set
The comparative advantages of RNA-Seq and microarrays in transcriptome profiling were evaluated in the context of a comprehensive study design. Gene expression data from Illumina RNA-Seq and Affymetrix microarrays were obtained from livers of rats exposed to 27 agents that comprised of seven modes o...
ORGANISM(S): Rattus norvegicus 
2014-08-08 | E-GEOD-55347 | biostudies-arrayexpress
TranscriptomicsGene transcription profiles and potential transgenerational epigenetic effects related to Zn exposure history in Daphnia magna
A reduced level of DNA methylation has recently been described in both Zn-exposed and non-exposed offspring of Daphnia magna exposed to Zn. The hypothesis examined in this study is that DNA hypomethylation has an effect on gene transcription. A second hypothesis is that accumulative epigenetic effec...
ORGANISM(S): Daphnia magna 
2010-07-23 | E-GEOD-22805 | biostudies-arrayexpress
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