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ProteomicsPopulus Drought Stress - Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves
We sought to generate a comprehensive proteomic profile for a Populus plant that captures protein abundance behavioral differences in mature leaves under various water deficit conditions. The sudden infliction of severe drought is unlikely to reflect what naturally happens to soil-grown plants. Ther...
ORGANISM(S): Populus deltoides (Eastern poplar) (Eastern cottonwood) 
2017-11-16 | PXD007748 | Pride
Lc-ms/ms Populus Plant Drought 
ProteomicsPeeling back the layers: Functional differentiation between Kalanchoë fedtschenkoi epidermis and mesophyll proteomes
What proteins exist in the epidermis layer and how they compare to the proteins in the surrounding mesophyll cells represents a major knowledge gap for how CAM plants thrive in environments with high temperatures and long periods of severe water deficit. Therefore, we performed large-scale proteomic...
ORGANISM(S): Kalanchoe fedtschenkoi 
2020-04-02 | PXD010837 | Pride
Cam Epidermal peel Shotgun proteomics Guard cell Mesophyll Plant proteomics 
ProteomicsProtein-level regulation of nitrogen and phosphorous metabolism in two endomycorrhizal fungi, Serendipita vermifera and Serendipita bescii
We sought to characterize the proteome and metabolome of S. vermifera and S. bescii under N and P starvation conditions in vitro. As very little is known about the ecological functioning of the Serendipitaceae in most environments, the overall objective of the study was to elucidate the cellular res...
ORGANISM(S): Serendipita vermifera MAFF 305830 Serendipita vermifera 'subsp. bescii' 
2019-05-20 | PXD010995 | Pride
Serendipita vermifera Protoemics Phosphate Serendipita bescii Mycorrhiza Nitrogen 
ProteomicsFunctional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination
The Salicaceae family is of growing interest in the study of dioecy in plants because the sex determination region (SDR) has been shown to be highly dynamic, with differing locations and heterogametic systems across taxa. Previous studies investigating the mechanisms regulating sex in the genus Sali...
ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702) 
2023-02-01 | MSV000091180 | MassIVE
ProteomicsHigh-density CRISPRi screens reveal adaptive transcriptional gradients in cyanobacteria
Cyanobacteria are the oldest form of photosynthetic life and contribute to primary production in nearly every habitat, from permafrost to hot springs. Despite longstanding interest in the biochemical basis of environmental adaptation in these microbes, it remains poorly understood. Here we used a hi...
ORGANISM(S): Synechococcus Sp. Pcc 7002 (ncbitaxon:32049) 
2024-04-18 | MSV000094564 | MassIVE
MetabolomicsTranscript, protein and metabolite temporal dynamics in the CAM plant Agave
Already a proven mechanism for drought sustainability, crassulacean acid metabolism (CAM) is a specialized type of photosynthesis that maximizes water-use efficiency (WUE) via an inverse (compared to C3 and C4 photosynthesis-performing species) day/night pattern of stomatal closure/opening to shift ...
2017-10-13 | MTBLS363 | MetaboLights
ProteomicsAn Orphan-Moonlighting Gene PRL-1 Enhances Photosynthetic Efficiency and Productivity in Plants
Increasing photosynthetic efficiency remains a major goal across the globe given its central role in CO2 assimilation. Here, we identified a nuclear genome-residing orphan gene, comprised of 3 exons, two with apparent endophytic origins and the third being a highly conserved fragment of the RIBULOSE...
ORGANISM(S): Populus Trichocarpa (ncbitaxon:3694) 
2023-04-24 | MSV000091785 | MassIVE
ProteomicsTranscriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis
Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis
ORGANISM(S): Olavius Algarvensis (ncbitaxon:188229) 
2016-02-12 | MSV000079512 | MassIVE
MetabolomicsThe Kalanchoe genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism
Crassulacean acid metabolism (CAM) is a water-use efficient adaptation of photosynthesis that has evolved independently many times in diverse lineages of flowering plants. We hypothesize that convergent evolution of protein sequence and temporal gene expression underpins the independent emergences o...
2018-01-09 | MTBLS519 | MetaboLights
MetabolomicsTowards engineering ectomycorrhization into switchgrass bioenergy crops via a lectin receptor-like kinase
Soil-borne microbes can establish compatible relationships with host plants, providing a large variety of nutritive and protective compounds in exchange for photosynthesized sugars. However, the molecular mechanisms mediating the establishment of these beneficial relationships remain unclear. Our pr...
2021-08-11 | MTBLS2597 | MetaboLights
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