Sort   by:  
 Page size 
ProteomicsFeatureFinderIdentification (OpenMS) analysis of the iPRG-2015 dataset
Benchmark of FeatureFinderIdentification (FFId), a targeted feature detection algorithm for use in label-free quantification, developed in the OpenMS software framework. The dataset used for the evaluation comes from the iPRG-2015 study ("Differential abundance analysis in label-free quantitative pr...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2017-07-07 | PXD006336 | Pride
Iprg-2015 Label-free quantification Feature detection Benchmark Shotgun proteomics 
ProteomicsABRF iPRG 2023 crosslinking study - Mascot COMPLETE results
The three proteomics research groups, Proteomics (PRG), Proteome Informatics (iPRG) and Proteomics Standards (sPRG), have all held interesting studies over the years. This year (2023) the iPRG group has put together a crosslinking study. The goal is to teach people how to analyze crosslinked samples...
ORGANISM(S): Escherichia coli (strain K12) 
2024-08-08 | PXD054720 | Pride
Cross-linking Abrf iprg Benchmark Crosslinking 
ProteomicsIPRG2015
IPRG-2015 Study -Differential Abundance Analysis in Label-Free Quantitative Proteomics. This study of LC-MS/MS data analysis focuses on data processing and statistical assessment for relative protein-level quantification in label-free proteomics.
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2016-06-20 | MSV000079843 | MassIVE
ProteomicsABRF iPRG 2023 crosslinking study - Kojak COMPLETE results
The three proteomics research groups, Proteomics (PRG), Proteome Informatics (iPRG) and Proteomics Standards (sPRG), have all held interesting studies over the years. This year (2023) the iPRG group has put together a crosslinking study. The goal is to teach people how to analyze crosslinked samples...
ORGANISM(S): Escherichia coli 
2024-10-17 | PXD056910 | Pride
Iprg2023 Benchmark Crosslinking 
ProteomicsQuantitation Analysis using OpenMS of iPRG2015: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC–MS/MS Experiments
The 2015 study of the Proteome Informatics Research Group (iPRG) of the Association of Biomolecular Resource Facilities (ABRF) aimed to evaluate the effects of the statistical analysis on the accuracy of the results. The study used LC–tandem mass spectra acquired from a controlled mixture, and made ...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2018-09-10 | PXD010981 | Pride
Openms Label-free Benchmark Iprg2015 Iprg study Reference dataset 
ProteomicsABRF iPRG2020 Metaproteomics Study Data
Replicate metaproteomic datasets containing four bacterial species and one bacteriophage.
ORGANISM(S): Escherichia phage T4 Salmonella enterica Escherichia coli Bacteria Bacillus subtilis 
2024-01-26 | PXD034795 | Pride
Iprg2020 Phage Bacteriophage Bacteria Abrf Iprg Metaproteomics 
ProteomicsiPRG 2009: Differential proteomics in Orbitrap E. coli lysates
The files in directory were generated as part of the ABRF iPRG 2009 Study. The sample is E. coli lysate. The five "red" RPLC runs lack the "green" set of proteins. The five "yellow" runs lack the "blue" set of proteins. Both red and yellow runs contain a spike of BSA to enable quantitative compa...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) 
2014-01-28 | MSV000078539 | MassIVE
Sort   by:  
 Page size