Adhesion molecules

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dechlorinating enrichment culture KB-1 (1)
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Olink affinity proteomics (1)

Instrument Platform

Q Exactive (19)
Orbitrap Fusion Lumos (8)
Illumina HiSeq 2500 (6)
NextSeq 500 (6)
NextSeq 2000 (4)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 4000 (4)
LTQ Orbitrap Velos (4)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Illumina HiSeq 2000 (2)
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GenePix 4000A [Axon Instruments] (1)
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BGISEQ-500 (1)
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AB 3130 Genetic Analyzer (1)

Publication Date

2010 (116)
2013 (84)
2014 (83)
2011 (81)
2015 (79)
2012 (79)
2025 (76)
2026 (74)
2008 (65)
2024 (64)
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2016 (62)
2021 (51)
2023 (50)
2009 (45)
2019 (42)
2007 (35)
2020 (33)
2018 (31)
2017 (26)
2005 (13)
2006 (9)
2004 (2)
2002 (2)

UNIPROT ID/AC

A0A1S3CTB2_DIACI (2)
A0A1S3CTF3_DIACI (2)
A0A1S3CTU5_DIACI (2)
A0A1S3CTY3_DIACI (2)
A0A1S3CU39_DIACI (2)
A0A1S3CU82_DIACI (2)
A0A1S3CUB6_DIACI (2)
A0A1S3CUK5_DIACI (2)
A0A1S3CUN8_DIACI (2)
A0A1S3CUR6_DIACI (2)
A0A1S3CUU7_DIACI (2)
A0A1S3CV85_DIACI (2)
A0A1S3CVC6_DIACI (2)
A0A1S3CVH1_DIACI (2)
A0A1S3CVV0_DIACI (2)
A0A1S3CVX4_DIACI (2)
A0A1S3CW20_DIACI (2)
A0A1S3CW59_DIACI (2)
A0A1S3CWA9_DIACI (2)
A0A1S3CWB5_DIACI (2)
A0A1S3CWE0_DIACI (2)
A0A1S3CWG9_DIACI (2)
A0A1S3CWK8_DIACI (2)
A0A1S3CWL3_DIACI (2)
A0A1S3CWM4_DIACI (2)
A0A1S3CWQ4_DIACI (2)
A0A1S3CWX0_DIACI (2)
A0A1S3CWX4_DIACI (2)
A0A1S3CWY8_DIACI (2)
A0A1S3CX04_DIACI (2)

CHEBI ID

CHEBI:15428 (5)
CHEBI:17154 (5)
CHEBI:16335 (4)
CHEBI:16704 (4)
CHEBI:16708 (4)
CHEBI:16811 (4)
CHEBI:16919 (4)
CHEBI:17596 (4)
CHEBI:18012 (4)
CHEBI:24898 (4)
CHEBI:25017 (4)
CHEBI:27266 (4)
CHEBI:7916 (4)
CHEBI:15741 (3)
CHEBI:15891 (3)
CHEBI:16015 (3)
CHEBI:16027 (3)
CHEBI:16199 (3)
CHEBI:16530 (3)
CHEBI:16668 (3)
CHEBI:16737 (3)
CHEBI:16958 (3)
CHEBI:17533 (3)
CHEBI:17724 (3)
CHEBI:17750 (3)
CHEBI:17754 (3)
CHEBI:18186 (3)
CHEBI:18257 (3)
CHEBI:18295 (3)
CHEBI:26806 (3)

Metabolite Name

Adenine (3)
Fumarate (3)
Inosine (3)
Isoleucine (3)
Leucine (3)
Methionine (3)
Succinate (3)
Uridine (3)
Valine (3)
Acetate (2)
Adenosine (2)
Alpha-ketoglutarate (2)
Beta-hydroxyisovalerate (2)
Betaine (2)
Creatine (2)
Dimethylglycine (2)
Formate (2)
Glycerol (2)
Glycine (2)
Glycine (2)
Histamine (2)
Hypotaurine (2)
Myo-inositol (2)
Nicotinurate (2)
O-Tyrosine (2)
Ribitol (2)
UDP-glucose (2)
UDP-glucuronate (2)
Urea (2)
(R)-3-hydroxybutyrylcarnitine (1)

First Public Date

2014 (143)
2026 (54)
2025 (53)
2024 (46)
2021 (37)
2022 (36)
2023 (34)
2020 (31)
2019 (27)
2017 (20)
2018 (17)
2016 (15)
2015 (13)
2013 (5)

Modelling Approach

Boolean model (1)

Study status

Suspended (1)

Lab affiliation

EPFL (3)
Proteomics group, Ri.MED Foundation, Palermo, Italy (3)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Faculty of Chemistry and Center for Synthetic Microbiology (SYNMIKRO) Head of the Core-Facility for Mass Spectrometry Marburg University Hans-Meerwein-Str. 4 35032 Marburg GERMANY (2)
Institute of Zoology and Center of Molecular Bioscience Innsbruck, University of Innsbruck, 6020 Innsbruck, Austria (2)
1. Department of Paediatrics, University Hospital of North Norway, Tromsø, Norway 2 Paediatric Research Group, Department of Clinical Medicine, Faculty of Health Sciences, UiT- The Arctic University of Norway, Tromsø, Norway. (1)
Affiliated Hospital of Nanjing University of Chinese Medicine (1)
Amherst College (1)
Associate Professor Department of Biological Sciences University of Denver (1)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (1)
Biochemistry (1)
Biomedical Research in Melanoma-Animal Models and Cancer Laboratory- Vall d´Hebron Research Institute VHIR-Vall d’Hebron Hospital Barcelona-UAB 08035, Spain. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
CNRS, Inserm, Nantes Université, Univ Angers, CRIC2NA, Nantes, France (1)
CRG, UPF (1)
Cambridge Institute for Medical Research, Hills Road, Cambridge, CB2 0XY (1)
Cancer Sciences, Faculty of Medicine, University of Southampton, UK (1)
Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK (1)
Chair in Translational Cancer Research, NHMRC Clinical Trials Centre, University of Sydney, Australia. NH&MRC Senior Principal Research Fellow. Deputy Director, Centenary Institute. Deputy Director, Sydney Catalyst. Head, ACRF Centenary Cancer Research Centre. (1)
College of Veterinary Medicine, Henan Agricultural University, International Joint Research Laboratory for Zoonotic Diseases of Henan, Zhengzhou, China (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark (1)
DEPARTMENT of CHEMISTRY & CHEMICAL BIOLOGY HARVARD UNIVERSITY (1)
DIVAS, University of Milan (1)
DZNE - German Center for Neurodegenerative Diseases Munich Neuroproteomics Feodor-Lynen Str. 17 D-81377 Munich Germany (1)
Department of Biochemistry and Chemistry, Centre for Cardiovascular Biology and Disease Research, La Trobe Institute for Molecular Science, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria 3086, Australia (1)
Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, Ljubljana, Slovenia (1)
Department of Biochemistry, Cinvestav-IPN. (1)
Department of Biochemistry, University of Oxford, Oxford, UK (1)
Department of Biomedical Sciences Faculty of Medicine and Health Science Macquarie University (1)
Department of Biosciences, University of Salzburg (1)

IsPrivate

False (1)

Classification

bacteria (3)
protozoa (1)

Modification

2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (454)
RNA-seq of coding RNA (69)
RNA-seq of non coding RNA (15)
Unknown experiment type (10)
Other (7)
RNA-seq of coding RNA from single cells (7)
Transcription profiling by RT-PCR (6)
Comparative genomic hybridization by array (5)
ChIP-seq (5)
Methylation profiling by array (4)
Transcription profiling by SAGE (3)
Genotyping by array (3)
Cell line - High-throughput sequencing (2)
Animal - One-color microarray (1)
Human - Single-cell sequencing (1)
Proteomic profiling by mass spectrometer (1)
RNAi profiling by array (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
Observational (1)

Release Date

2022 (574)
2021 (489)
2020 (479)
2023 (460)
2019 (382)
2025 (360)
2018 (329)
2024 (327)
2016 (321)
2017 (317)
2015 (306)
2014 (299)
2013 (253)
2012 (227)
2010 (220)
2011 (207)
2009 (152)
2008 (133)
2007 (75)
2026 (52)
2005 (51)
2006 (50)
2004 (23)
2002 (22)
2003 (14)
2001 (14)
1998 (11)
1999 (10)
2000 (8)
1997 (8)

Location

United States (1)

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Chronic high glucose condition reduced expressions of intercellular adhesion molecules and increased intercellular hyperpermeability in periodontal epithelium.

There is a close relationship between hyperglycemia in diabetes and progression of periodontal disease. This study aims to investigate the effect of hyperglycemia on the barrier function of gingival epithelial cells as a cause of hyperglycemia-exacerbated periodontitis in diabetes mellitus. Abnormal...

ORGANISM(S): Mus Musculus (mouse)

2023-07-29 | PXD035613 | JPOST Repository

Analysis of extracellular matrix and adhesion molecules expression in ALL cell line

The acute lymphoblastic leukemia cells lines JM-1, REH, Nalm-27, and SUP-B15 were analyzed for baseline expression of extacellular matrix and adhesion molecules using a pathway focused cDNA microarray (SABiosciences). RNA isolated from the ALL cell lines JM-1, REH, Nalm-27, and SUP-B15 was analyzed ...

ORGANISM(S): Homo sapiens

2010-05-01 | E-GEOD-18516 | biostudies-arrayexpress

Role of adhesion molecules in cholestatic liver disease

The adhesion molecules Beta 7 integrin and L-Selectin contribute to cholestatic liver disease in mice.

PRJEB82426 | ENA

Pten regulates endocytic trafficking of cell adhesion and signaling molecules to pattern the retina

The retina is an exquisitely patterned tissue, with neuronal somata positioned at regular intervals to completely sample the visual field. Cholinergic amacrine cells are spectacular exemplars of precision, distributing in two radial layers and tangentially, forming regular mosaics. Here, we investig...

ORGANISM(S): Mus musculus (Mouse)

2024-08-09 | PXD036221 | Pride

A Whole-Cell Screening Platform for Discovering Cell Adhesion Molecules Enabling Programmable Bacterial Cell-Cell Adhesion

PRJNA1047165 | ENA

The relationship between expression imbalance of adhesion molecules and asthma pathogenesis

Accumulated research has suggested the importance of the adhesion molecules modulation as therapeutic approach for bronchial asthma. Adhesion molecules expression alteration contributes to the pathogenesis of asthma. In order to probe the relationship between expression imbalance of adhesion molecul...

ORGANISM(S): Homo sapiens

2014-02-01 | E-GEOD-54605 | biostudies-arrayexpress

Transcription profiling of stigmas after pollination and after pollen coat adhesion

Transcriptional analysis of stigmas was performed to identify molecules functioning in compatible pollination. Stigmas of A. thaliana Col-0 were collected (i) at 0 min or 15 min after pollination and (ii) before or at 15 min after pollen coat adhesion, and used for microarray analysis. Genes up-reg...

ORGANISM(S): Arabidopsis thaliana

2014-02-26 | E-GEOD-54637 | biostudies-arrayexpress

The relationship between expression imbalance of adhesion molecules and asthma pathogenesis

ORGANISM(S): Homo sapiens

2014-02-01 | GSE54605 | GEO

In-Vitro Cell Adhesion Assay

The adhesion of monocytic cells to the M-^SdysfunctionalM-^T endothelium constitutes a critical step in the initiation of atherosclerotic plaque formation. Cigarette smoke (CS) has been shown to contribute to the monocyte-endothelial adhesion process. Yet, the complex mechanisms underlying this even...

ORGANISM(S): Homo sapiens

2014-04-24 | E-MTAB-1173 | biostudies-arrayexpress

Activated leukocyte cell adhesion molecule on human oligodendrocytes mediates Th17 cell adhesion

PRJNA962726 | ENA

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