E. coli steady-state cultures were grown at different aerobiosis levels; transcriptomic profiling was carried out of these cultures to measure oxygen-dependent gene expression using a reference-design microarray format.
Using strain NCTC 11168 in carbon (serine)-limited continuous cultures we report the first detailed examination of oxygen-dependent changes in gene and protein expression in Campylobacter jejuni under conditions where the growth rate is fixed. We show that in steady-states established at μ = 0.2 h-1...
To investigate the adaptation of Corynebacterium glutamicum to altering oxygen availabilities, we conceived a triple-phase fermentation process that describes a gradual reduction of dissolved oxygen depicting a shift from aerobiosis via microaerobiosis to anaerobiosis. The distinct process phases we...
16S sequencing on almond skin fermented and unfermented matrices (under controlled and uncontrolled conditions controlled/anaerobiosis and uncontrolled/aerobiosis conditions) Raw sequence reads
Oxygen transition experiement. Chemostat initially at steady state under oxygen replete conditions (7.5% oxygen input) was perturbed by a reduction in oxygen input (to 1.88% oxygen input). Samples were taken at the 7.5% oxygen and new 1.88% oxygen steady-states and at various points during the trans...
