Allen L L - OmicsDI

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Unknown (4079)
Transcriptomics (218)
Proteomics (56)
Genomics (49)
Metabolomics (29)
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Models (3)
Genomic (1)

Organisms

Homo sapiens (135)
Mus musculus (55)
Rattus norvegicus (16)
Saccharomyces cerevisiae (14)
Arabidopsis thaliana (7)
Drosophila mojavensis (5)
Emiliania huxleyi (4)
Picea glauca (3)
Medicago truncatula (3)
Oryza sativa (3)
Nicotiana tabacum (3)
Phaeodactylum tricornutum (2)
Daphnia magna (2)
Vitis vinifera (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Danio rerio (2)
Thalassiosira pseudonana CCMP1335 (2)
Rhabdomys pumilio (1)
Ictalurus punctatus x Ictalurus furcatus (1)
Drosophila serrata (1)
Vitis labrusca x Vitis vinifera (1)
Ralstonia solanacearum UW551 (1)
Cafeteria roenbergensis virus BV-PW1 (1)
marine metagenome (1)
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Salmonella enterica (1)
Anolis carolinensis (1)
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Loxodonta africana (1)
Ectocarpus siliculosus (1)

Organisms

Lepraria neglecta (1)
Citrus x limon (1)
Theobroma cacao (1)
Triticum aestivum (1)

Repository

biostudies-arrayexpress (231)
pride (34)
EGA (33)
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Tissue

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Disease

Colorectal cancer (3)
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Technology Type

Mass Spectrometry (34)
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MSE (2)
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Instrument Platform

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N/A (1)
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Illumina HiSeq 2500 (1)
Hydro reverse-phase (RP) high-performance liquid chromatography (HPLC) followed by ionization by electrospray in negative mode on an Orbitrap mass spectrometer (1)
LTQ (1)
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Synapt G2-S HDMS (1)

Publication Date

2015 (28)
2014 (26)
2013 (26)
2008 (26)
2010 (23)
2012 (21)
2011 (20)
2016 (18)
2023 (16)
2022 (16)
2021 (15)
2009 (15)
2025 (13)
2024 (13)
2007 (12)
2019 (9)
2017 (7)
2026 (6)
2006 (4)
2020 (2)
2018 (2)
2004 (1)

CHEBI ID

CHEBI:16704 (11)
CHEBI:18237 (11)
CHEBI:28044 (11)
CHEBI:15741 (10)
CHEBI:16335 (10)
CHEBI:17368 (10)
CHEBI:16919 (9)
CHEBI:17596 (9)
CHEBI:18186 (9)
CHEBI:15891 (8)
CHEBI:17568 (8)
CHEBI:17858 (8)
CHEBI:18012 (8)
CHEBI:25017 (8)
CHEBI:27897 (8)
CHEBI:30769 (8)
CHEBI:15354 (7)
CHEBI:16708 (7)
CHEBI:16750 (7)
CHEBI:16856 (7)
CHEBI:17154 (7)
CHEBI:17562 (7)
CHEBI:28842 (7)
CHEBI:29016 (7)
CHEBI:7916 (7)
CHEBI:15611 (6)
CHEBI:16027 (6)
CHEBI:16196 (6)
CHEBI:16235 (6)
CHEBI:16449 (6)

Metabolite Name

Hypoxanthine (7)
Inosine (7)
Adenosine (6)
L-Lactic acid (6)
Phenylalanine (6)
Succinic acid (6)
Uridine (6)
Choline (5)
Citric acid (5)
Creatine (5)
Cytidine (5)
Guanosine (5)
L-Tyrosine (5)
Uracil (5)
Xanthine (5)
ADP (4)
AMP (4)
Adenine (4)
Alanine (4)
Creatinine (4)
Glycine (4)
L-Aspartic acid (4)
L-Cysteine (4)
L-Isoleucine (4)
L-Methionine (4)
L-Phenylalanine (4)
L-Threonine (4)
L-Tryptophan (4)
L-Valine (4)
Leucine (4)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

First Public Date

2022 (2)
2014 (1)
2013 (1)

Modelling Approach

Constraint-based model (2)

Study type

Transcription profiling by array (142)
RNA-seq of coding RNA (26)
ChIP-seq (10)
Unknown experiment type (9)
RNA-seq of coding RNA from single cells (7)
RNA-seq of non coding RNA (7)
Comparative genomic hybridization by array (5)
Transcription profiling by tiling array (3)
Genotyping by array (3)
Other (3)
Transcription profiling by SAGE (2)
ChIP-chip by tiling array (2)
Transcription profiling by RT-PCR (2)
Differential (1)
Animal - One-color microarray (1)
High-throughput sequencing (1)
RNAi profiling by array (1)
RIP-seq (1)
DNA-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2023 (441)
2022 (423)
2024 (422)
2021 (418)
2025 (393)
2020 (308)
2019 (271)
2018 (249)
2015 (207)
2017 (199)
2016 (171)
2014 (153)
2011 (110)
2013 (101)
2010 (96)
2012 (90)
2026 (74)
2009 (61)
2008 (48)
2007 (25)
2006 (18)
2005 (9)
2004 (7)
2002 (4)
1999 (3)
2003 (2)
2001 (2)
2000 (2)
1998 (2)
1977 (1)

Lab affiliation

Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, USA (2)
School of Biotechnology and Biomolecular Sciences The University of NSW Sydney NSW 2052 Australia (2)
The Institute of Cancer Research (2)
University of the Pacific (2)
Woods Hole Oceanographic Institution, Marine Chemistry and Geochemistry Department (2)
Agios Pharmaceuticals 88 Sidney Street Cambridge MA 02139 USA (1)
CMU, University of Geneva (1)
Case Western Reserve University, Department of Genetics and Genome Sciences, School of Medicine (1)
Centre Médical Universitaire, University of Geneva (1)
Children's Medical Research Institute. Telomere Length Regulation Unit. (1)
Department of Biological Sciences, Tomida Lab, University of North Carolina at Charlotte, USA (1)
Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada (1)
Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, United States. (1)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel. (1)
Department of Molecular Medicine, The Scripps Research Institute (1)
Department of Pharmacology University of North Carolina - Chapel Hill Chapel Hill, NC 27599 (1)
Dept. Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Munich, Germany (1)
Functional Proteomics, ICR (1)
Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Edward Llwyd Z2.01. (1)
LSMP Institut Curie FRANCE (1)
Lecturer in Chemical Systems Biology Department of Chemistry King's College London (1)
MDC Berlin-Buch Germany (1)
Mass Spectrometry Research Center Departments of Biochemistry, Chemistry, Pharmacology, Medicine Vanderbilt University Nashville TN, USA (1)
Pediatric Cancer Metabolism Laboratory, Children's Research Center, University of Zurich, 8032 Zurich, Switzerland. Division of Oncology, University Children's Hospital Zurich and Children's Research Center, University of Zurich, 8032 Zurich, Switzerland. (1)
School of Biotechnology and Biomolecular Sciences, The University of NSW, Sydney NSW 2052 Australia (1)
Senior Lecturer, Wellcome Trust Centre for Cell-Matrix Research, Division of Cell Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 (1)
Sonia Melo, PhD Principal Investigator Cancer Unit Intercellular Communication and Cancer i3s (http://www.i3s.up.pt) Rua Alfredo Allen, 208 | 4200-135 Porto - Portugal (1)
Unidad de Proteómica, Centro Interdisciplinar de Química y Biología (CICA), Universidade da Coruña (UDC), Spain. (1)
University of NSW (1)

Tags

xref:EuropePMC:PMC4053823 (1)
xref:EuropePMC:PMC4535616 (1)
xref:EuropePMC:PMC8050207 (1)
xref:EuropePMC:PMC7819121 (1)
xref:EuropePMC:PMC11526608 (1)

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L-Myc expression by dendritic cells is required for optimal T-cell priming

The transcription factor IRF8 is a critical regulator of plasmacytoid dendritic cell (pDC) and classical dendritic cell (cDC) development in both mouse and man. Yet the downstream molecular targets that regulate DC homeostasis and development are largely unknown. A recent study using gene expressi...

ORGANISM(S): Mus musculus

2013-12-14 | E-GEOD-53311 | biostudies-arrayexpress

Lepraria neglecta isolate:Allen 5258

Lepraria neglecta isolate:Allen 5258 Genome sequencing and assembly

PRJNA887108 | ENA

Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica)

MicroRNAs (miRNAs) and small interfering RNAs (siRNAs) regulate gene expression in eukaryotes. Plant miRNAs modulate their targets mainly via messenger RNA (mRNA) cleavage. Small RNA targets have been extensively investigated in Arabidopsis using computational prediction, experimental validation, an...

ORGANISM(S): Oryza sativa Indica Group

2010-01-01 | E-GEOD-19050 | biostudies-arrayexpress

Post-epidemic eosinophilia myalgia syndrome associated with L-Tryptophan

Eosinophilia–myalgia syndrome (EMS) is characterized by subacute onset of myalgias and peripheral eosinophilia, followed by chronic neuropathy and skin induration. The EMS epidemic in 1989 was linked to L-tryptophan consumption originating from a single source. Following the Food and Drug Administra...

ORGANISM(S): Homo sapiens

2012-01-28 | E-GEOD-26934 | biostudies-arrayexpress

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas.

Not available

S-EPMC8152789 | biostudies-literature

Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in T. aestivum and B. distachyon

The small RNA transcriptomes of bread wheat (Triticum aestivum L.) and its emerging model (Brachypodium distachyon (L.) Beauv) were obtained by using deep sequencing technology. Small RNA compositions were analyzed in these two species. In addition to 70 conserved microRNAs (miRNA) from 25 families,...

ORGANISM(S): Triticum aestivum

2009-06-07 | E-GEOD-16177 | biostudies-arrayexpress

Citrus x limon strain:Allen Eureka

Low temperature transcriptionally modulates natural peel degreening in lemon (Citrus limon L.) fruit independently of endogenous ethylene

PRJDB9486 | ENA

L-type voltage-gated Ca²⁺ channel Ca_V1.2 regulates chondrogenesis during limb development.

Not available

S-EPMC6815189 | biostudies-literature

The complete mitochondrial genome of <i>Crocidura rapax</i> Allen, 1923 and its phylogenetic analyses.

Not available

S-EPMC11905319 | biostudies-literature

Empirically Estimated Electron Lifetimes in the Earth's Radiation Belts: Van Allen Probe Observations.