Alonso J J - OmicsDI

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Unknown (3701)
Transcriptomics (64)
Proteomics (41)
Genomics (24)
Metabolomics (11)
Models (1)

Organisms

Homo sapiens (61)
Aerococcus urinae NBRC 15544 = CCUG 36881 (40)
Allexis (40)
Arabidopsis thaliana (40)
Cyanophora paradoxa (40)
Ensifer adhaerens (40)
Entamoeba histolytica (40)
Escherichia coli (40)
Globicatella sanguinis (40)
Histomonas meleagridis (40)
Leishmania major strain Friedlin (40)
Listeria monocytogenes (40)
Lotus japonicus (40)
Medicago truncatula (40)
Methylohalobius crimeensis 10Ki (40)
Mus musculus (40)
Mycobacterium tuberculosis (40)
Oryza sativa Indica Group (40)
Physcomitrium patens (40)
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Rattus norvegicus (40)
Saccharomyces cerevisiae (40)
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Mus musculus (12)
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Populus tremula x Populus tremuloides (2)
Salmo salar (2)
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Mammalia (1)
Rattus norvegicus (1)

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pride (40)
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Mass Spectrometry (40)
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Instrument Platform

Illumina NovaSeq 6000 (9)
NextSeq 500 (7)
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Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 2000 (2)
6550 iFunnel Q-TOF LC/MS (Agilent) (2)
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Agilent Technologies 5975 GC/MSD (1)
Liquid Chromatography MS - positive - reverse phase - LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - negative - reverse phase - LTQ Orbitrap Velos (Thermo Scientific) (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS - positive (1)
MaXis (Bruker) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - positive (1)

Publication Date

2022 (12)
2020 (11)
2016 (10)
2015 (10)
2024 (9)
2018 (9)
2023 (8)
2021 (8)
2012 (8)
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2014 (5)
2008 (3)
2007 (3)
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2010 (2)
2009 (2)
2017 (2)
2005 (1)
2011 (1)
2006 (1)
2003 (1)
2019 (1)

CHEBI ID

CHEBI:16919 (5)
CHEBI:57593 (3)
CHEBI:27570 (3)
CHEBI:46234 (3)
CHEBI:88493 (2)
CHEBI:136124 (2)
CHEBI:91054 (2)
CHEBI:132692 (2)
CHEBI:132556 (2)
CHEBI:72715 (2)
CHEBI:27584 (2)
CHEBI:73072 (2)
CHEBI:63874 (2)
CHEBI:32389 (2)
CHEBI:53488 (2)
CHEBI:73039 (2)
CHEBI:27386 (2)
CHEBI:27485 (2)
CHEBI:29019 (2)
CHEBI:73074 (2)
CHEBI:26271 (2)
CHEBI:17202 (2)
CHEBI:18237 (2)
CHEBI:17126 (2)
CHEBI:22660 (2)
CHEBI:22652 (2)
CHEBI:17234 (2)
CHEBI:81564 (2)
CHEBI:28044 (2)
CHEBI:17242 (2)

Metabolite Name

LysoPE(20:0) (2)
PI(40:3) (2)
Inosine 5'-monophosphate (IMP) (2)
Ascorbic acid (2)
Creatine (2)
PE(40:9) (1)
6,7-Epoxyoctadecanoic acid (1)
DiHETrE (1)
DHET (1)
HxB3 (1)
HxA3 (1)
DiHETE (1)
HpETE (1)
PGF2 lactone (1)
HpODE (1)
18-carboxy dinor LTB4 (1)
TriHETRE (1)
THETA (1)
Epi-PGF2 (1)
Dihydro-keto PGF2 (1)
Resolvin D4 (1)
2,3-Dinor-8-iso PGF1 (1)
Keto-PGF1 (1)
Ribulose 5-p (1)
Ribose 5-p (1)
Ribose 1-p (1)
UDP-galactofuranose (1)
UDP-N-acetymannosamine (1)
UDP-N-acetygalactosamine (1)
UDP-N-acetyglucosamine (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (33)
RNA-seq of coding RNA (9)
Comparative genomic hybridization by array (6)
ChIP-seq (3)
Methylation profiling by array (3)
ATAC-seq (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Plant - High-throughput sequencing (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
DNA-seq (1)

Release Date

2022 (484)
2021 (460)
2023 (409)
2025 (406)
2024 (330)
2020 (314)
2019 (242)
2018 (212)
2017 (175)
2016 (149)
2015 (134)
2014 (95)
2013 (69)
2026 (64)
2012 (59)
2010 (38)
2011 (33)
2009 (29)
2008 (14)
2007 (14)
2006 (11)
2005 (6)
2004 (6)
2002 (5)
2003 (4)
2000 (3)
1999 (3)
1998 (1)

Lab affiliation

Instituto de Investigaciones Sanitarias de Santiago de Compostela (5)
Instituto de Nanobiotecnologıa (NANOBIOTEC), UBA-CONICET-Universidad de Buenos Aires, Buenos Aires, Argentina (2)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo & Instituto de Investigaciones Biológicas Clemente Estable. (1)
Breast Cancer Clinical Research Unit, CNIO, Spanish National Cancer Research Centre, Spain (1)
CNIC (1)
Cancer Biomarkers Research Group Health Research Institute-Fundacion Jimenez Diaz (IIS-FJD, UAM) Madrid, Spain (1)
Center for Genomic Regulation (CRG), University Pompeu Fabra (UPF) (1)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, Majadahonda, E-28220 Madrid, Spain (1)
Department of Chemical and Physical Sciences, University of Toronto Mississauga, Mississauga, Canada (1)
Division of Translational Pediatric Sarcoma Research (lab head), German Cancer Research Center (1)
Functional Proteomics Unit Chronic Disease Programme Instituto de Salud Carlos III (1)
Fundacion Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Head of Proteomics Unit Spanish National Cancer Research Centre (CNIO) Address: Melchor Férnandez Almagro, 3. 28029 Madrid. SPAIN (1)
IPBS, CNRS-UPS, BP 64182, 205 route de Narbonne, F-31077 Toulouse Cedex 04, France (1)
Institut National de la Transfusion Sanguine, Laboratoire d’Excellence GR-Ex, F-75015 Paris, France (1)
J. Forja Dpt. Physical Chemistry CACYTMAR Campus de Excelencia Internacional del Mar University of Cadiz (Spain) (1)
Laboratory of Equine Reproduction and Spermatology. Department of Animal Reproduction Veterinary Teaching Hospital University of Extremadura, Cáceres Spain (1)
Max Planck Institute for Molecular Biomedicine Bioanalytical Mass Spectrometry Röntgenstr. 20 48149 Münster Germany (1)
Navarrabiomed-Clinical Neuroproteomics Laboratory, IdisNA, Proteored-ISCIII (1)
Neuroproteomics lab Navarrabiomed-Proteored (1)
OncoProteomics Laboratory, Amsterdam UMC, The Netherlands (1)
Private Medical University of Salzburg (1)
Professor of Biochemistry Proteomics Unit Centro Nacional de Biotecnología (CSIC) Darwin 3, 28049, Madrid (1)
Programa de Genómica Funcional de Procariotes, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, México. (1)
Proteomics Platform CIC bioGUNE, Bizkaia Tec. Park Build. 800, derio 48160 Bizkaia (Spain) (1)
Proteomics Unit Centro Nacional de Investigaciones Cardiovasculares CNIC Madrid Spain (1)
Proteomics Unit Spanish National Cancer Research Center (CNIO) Madrid (Spain) (1)
Proteomics Unit Spanish National Cancer Research Centre (CNIO) Madrid,SPAIN (1)
Proteomics Unit, Navarrabiomed-proteored (Spain) (1)
The MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, The University of Dundee, Dundee DD1 5EH, UK (1)

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Loss of RNase J leads to multi-drug tolerance and accumulation of highly structured mRNA fragments in Mycobacterium tuberculosis.

Not available

S-EPMC9312406 | biostudies-literature

Stitchr: stitching coding TCR nucleotide sequences from V/J/CDR3 information.

Not available

S-EPMC9262623 | biostudies-literature

Cardiomyocyte-myofibroblast contact dynamism is modulated by connexin-43.

Not available

S-EPMC6704460 | biostudies-literature

Gene expression profiling of BRCA1-mutated breast tumors

Background: Breast cancer is a complex disease, encompassed by different clinically and molecularly stratified entities. In 2000, Perou and colleagues demonstrated that tumor phenotypic diversity correlates with differences in global gene expression patterns, which in turn reflect aspects of the bio...

ORGANISM(S): Homo sapiens

2009-10-14 | E-GEOD-12350 | biostudies-arrayexpress

Cloning and characterization of SmeDEF, a novel multidrug efflux pump from Stenotrophomonas maltophilia.

Not available

S-EPMC101606 | biostudies-literature

Comparative characterization of the infant gut microbiome and their maternal lineage by a multi-omics approach

The human gut microbiome establishes and matures during infancy, and dysregulation at this stage may lead to pathologies later in life. We conducted a multi-omics study comprising three generations of family members to investigate the early development of the gut microbiota. Fecal samples from 20...

2024-03-07 | MTBLS7670 | MetaboLights

Mesenchymal stem cell therapy in retinal and optic nerve diseases: An update of clinical trials.

Not available

S-EPMC5120242 | biostudies-literature

Molecular and morphological convergence to sulfide-tolerant fishes in a new species of Jenynsia (Cyprinodontiformes: Anablepidae), the first extremophile member of the family.

Not available

S-EPMC6619989 | biostudies-literature

High-Resolution Rotational Spectrum, Dunham Coefficients, and Potential Energy Function of NaCl.

Not available

S-EPMC5056638 | biostudies-literature

Supplementary data for the biological age linked to oxidative stress modifies breast cancer aggressiveness.

Not available