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ProteomicsAn optimized proteomics approach reveals novel alternative proteins in mouse liver development
Alternative open reading frames (AltORFs) are unannotated sequences in genome that encode novel peptides or proteins named alternative proteins (AltProts). Although ribosome profiling and bioinformatics predict a large number of AltProts, mass spectrometry (MS) as the only direct way of identificati...
ORGANISM(S): Mus musculus (Mouse) 
2022-12-23 | PXD033940 | Pride
Liver development. Mass spectrometry Fractionation Alternative open reading frames (altorfs) Alternative proteins (altprots) Enrichment 
UnknownDeep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins.
Not available
S-EPMC5703645 | biostudies-literature
UnknownDirect detection of alternative open reading frames translation products in human significantly expands the proteome.
Not available
S-EPMC3741303 | biostudies-literature
UnknownIn-Depth Annotation of the Drosophila Bithorax-Complex Reveals the Presence of Several Alternative ORFs That Could Encode for Motif-Rich Peptides.
Not available
S-EPMC8616405 | biostudies-literature
UnknownThe Protein Coded by a Short Open Reading Frame, Not by the Annotated Coding Sequence, Is the Main Gene Product of the Dual-Coding Gene MIEF1.
Not available
S-EPMC6283296 | biostudies-literature
ProteomicsOptimized Sample Preparation Workflow for Improved Identification of Ghost Proteins
Large scale proteomic strategies rely on database interrogation. Thus, only referenced proteins can be identified. Recently, Alternative Proteins (AltProts) translated from nonannotated Alternative Open reading frame (AltORFs) were discovered using customized databases. Because of their small size w...
ORGANISM(S): Homo sapiens (Human) 
2021-02-15 | PXD024134 | Pride
Protein identification Fractionation Precipitation Peptides and proteins Extraction 
UnknownA small protein coded within the mitochondrial canonical gene nd4 regulates mitochondrial bioenergetics.
Not available
S-EPMC10193809 | biostudies-literature
UnknownNoncanonical altPIDD1 protein: unveiling the true major translational output of the PIDD1 gene.
Not available
S-EPMC11557682 | biostudies-literature
UnknownIdentification of Non-Canonical Translation Products in C. elegans Using Tandem Mass Spectrometry.
Not available
S-EPMC8575065 | biostudies-literature
UnknownThe FUS gene is dual-coding with both proteins contributing to FUS-mediated toxicity.
Not available
S-EPMC7788448 | biostudies-literature
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