Alves D D - OmicsDI

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Unknown (1468)
Transcriptomics (69)
Genomics (41)
Proteomics (40)
Metabolomics (6)

Organisms

Homo sapiens (66)
Caenorhabditis elegans (32)
Mus musculus (17)
Candida albicans (5)
Escherichia coli (3)
Rattus norvegicus (3)
Canis lupus familiaris (2)
Lathyrus oleraceus (2)
Macrobrachium nipponense (1)
Bacillus thuringiensis Bt407 (1)
Bacillus thuringiensis (1)
Aggregatibacter actinomycetemcomitans (1)
Citrus sinensis (1)
Brachypodium distachyon (1)
Bos taurus (1)
Microcebus murinus (1)
Saccharomyces cerevisiae (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Sus scrofa (1)
Notata (1)
Apis mellifera (1)
Arabidopsis thaliana (1)
Architeuthis dux (1)
Camponotus fellah (1)
Camponotus floridanus (1)
Candidozyma auris (1)
Elephas maximus maximus (1)
Emergomyces africanus (1)
Klebsiella pneumoniae (1)
Pseudomonas aeruginosa (1)

Repository

biostudies-arrayexpress (105)
pride (35)
EGA (7)
MetaboLights (6)
MassIVE (2)
PanoramaPublic (1)

Tissue

Cell culture (8)
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Brain (3)
Heart (3)
Skeletal muscle fiber (2)
Stem cell (2)
Amniotic fluid (1)
Blood serum (1)
Cardiac muscle cell (1)
Embryonic stem cell (1)
Epithelial cell of prostate (1)
Hemolymph (1)
Hepatocyte (1)
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Prostate adenocarcinoma cell (1)
Regular cardiac myocyte (1)
Retinal pigment epithelium cell (1)
Saliva (1)
Seed (1)

Disease

Candidiasis (2)
Unspecified peripheral T-cell lymphoma (1)
Breast cancer (1)
CAKUT (1)
COVID-19 (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Frontotemporal dementia and/or amyotrophic lateral sclerosis-4 (1)
Myocardial ischemia (1)
Pancreatic cancer (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (22)
Bottom-up proteomics (6)
Mass spectrometry (5)
Gel-based experiment (3)
SWATH MS (3)
Data-dependent acquisition (2)
Data-independent acquisition (2)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (10)
Illumina HiSeq 2000 (3)
Xevo G2 Q-Tof (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina protocol (1)
AB SOLiD System 3.0 (1)
G2565BA DNA microarray scanner [Agilent] (1)
Ion Torrent Proton (1)
Illumina HiSeq 4000 (1)
Flow injection analysis MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2011 (36)
2015 (13)
2023 (12)
2025 (11)
2013 (10)
2014 (9)
2021 (8)
2026 (8)
2016 (7)
2022 (6)
2012 (5)
2019 (4)
2010 (4)
2024 (4)
2020 (3)
2018 (2)
2017 (2)
2009 (2)
2008 (1)
2007 (1)

CHEBI ID

CHEBI:16708 (2)
CHEBI:168980 (2)
CHEBI:17509 (2)
CHEBI:17859 (2)
CHEBI:86910 (2)
CHEBI:100147 (1)
CHEBI:100246 (1)
CHEBI:10070 (1)
CHEBI:10101 (1)
CHEBI:102265 (1)
CHEBI:102484 (1)
CHEBI:10304 (1)
CHEBI:10554 (1)
CHEBI:10565 (1)
CHEBI:10642 (1)
CHEBI:10650 (1)
CHEBI:10724 (1)
CHEBI:107736 (1)
CHEBI:11041 (1)
CHEBI:110423 (1)
CHEBI:111173 (1)
CHEBI:111506 (1)
CHEBI:111517 (1)
CHEBI:112 (1)
CHEBI:113 (1)
CHEBI:113542 (1)
CHEBI:113543 (1)
CHEBI:1148 (1)
CHEBI:116735 (1)
CHEBI:1184 (1)

Metabolite Name

Glutaric acid (2)
Hydroxyisovaleroyl carnitine (2)
()-2-(2-Furanyl)pyrrolidine (1)
()-2-Methylbutanal (1)
()-2-Methylpentanoic acid (1)
()-2-Pentanol acetate (1)
()-Furaneol (1)
()-Furilazole (1)
()-Glycerol 1,2-diacetate (1)
()-Hydroxycitronellol (1)
()-Pelletierine (1)
()-Sulfobutanedioic acid (1)
()-Tryptophan (1)
()-cis-Linalyl oxide (1)
()-threo-1-(4-Hydroxyphenyl)-1,2,3-propanetriol (1)
(+)-3-(3,4-Methylenedioxyphenyl)-1,2-propanediol (1)
(+)-cis-Linalool 3,7-oxide (1)
(+/-)-1-Acetoxy-1-ethoxyethane (1)
(+/-)-2-(5-Methyl-5-vinyltetrahydrofuran-2-yl)propionaldehyde (1)
(+/-)-3-(Ethylthio)butanol (1)
(+/-)-4-Mercapto-4-methyl-2-pentanol (1)
(+/-)-Ethyl 3-acetoxy-2-methylbutyrate (1)
(+/-)-Methyl 5-acetoxyhexanoate (1)
(-)-3-Cyanomethyl-3-hydroxy-1H-indol-2(3H)-one (1)
(-)-5-(2-Propenyl)-2-oxazolidinethione (1)
(-)-Bornesitol (1)
(-)-Salsoline (1)
(-)-trans-3,4-Dihydro-4,8-dihydroxy-3-methyl-1H-2-benzopyran-1-one (1)
(1-Methylethenyl)pyrazine (1)
(12R)-15-amino-13-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-3,7,12-trihydroxy-4,4,6,8,12,16-hexamethyl-17-(2-methyl-1,3-thiazol-4-yl)-5-oxoheptadec-16-enoic acid (1)

Modification

N6 (1)

Study type

Transcription profiling by array (39)
ChIP-seq (34)
RNA-seq of coding RNA (12)
RNA-seq of non coding RNA (4)
Comparative genomic hybridization by array (3)
Methylation profiling by array (2)
Proteomic profiling by array (2)
Unknown experiment type (1)
Two-color microarray (1)
Cell line - One-color microarray (1)
Trajectory (1)
Spatial transcriptomics by high-throughput sequencing (1)
Ribo-seq (1)
Other (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2022 (202)
2025 (192)
2023 (179)
2021 (178)
2024 (147)
2020 (124)
2019 (98)
2018 (65)
2017 (64)
2016 (59)
2015 (59)
2011 (48)
2014 (37)
2026 (34)
2013 (23)
2012 (21)
2010 (15)
2009 (12)
2007 (4)
2006 (4)
2008 (3)
2005 (1)
2004 (1)
2003 (1)
1999 (1)
1998 (1)

Lab affiliation

Department of Clinical Microbiology, Sahlgrenska University Hospital, Gothenburg, Sweden (2)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Theodor-Stern-Kai 7, D-60590 Frankfurt am Main, Germany (2)
Pacific Northwest National Laboratory (2)
Analytical Biochemistry and Proteomics Unit, IIBCE and Institut Pasteur de Montevideo (1)
Associate professor at University of Campinas-SP (UNICAMP-SP) (1)
Cell Biology of Bacterial Infections, IBMC, i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, DK-5000 Odense C, Denmark (1)
Department of Gene Expression, Faculty of Biology, Adam Mickiewicz University in Poznan, Poznan, Poland (1)
Department of Medical Sciences and Institute of Biomedicine - iBiMED, University of Aveiro, 3810-193 Aveiro, Portugal (1)
Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390 (1)
Département d'écologie et évolution Université de Lausanne Bâtiment Biophore CH-1015 Lausanne Switzerland (1)
European Institute of Oncology, Milan, Italy (1)
European Research Institute for the Biology of Ageing, University of Groningen, Groningen, 9713 AV, the Netherlands. (1)
Faculty of Medicine of the University of Porto Alameda Prof. Hernâni Monteiro, 4200-319 Porto, Portugal (1)
General Manager of PROMEC, NTNU, Norway (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Human Genome and Stem Cell Research Center, Department of Genetics and Evolutionary Biology, Biosciences Institute, Brazil (1)
I2MC Inserm U1048 - Toulouse (1)
INRA - Centre Val de Loire (1)
James McGill Professor of Neurology and Neurosurgery and Anatomy and Cell Biology Montreal Neurological Institute-Hospital McGill, Montreal CANADA (1)
Ludwig Institute for Cancer Research Department of Oncology, University hospital of Lausanne, Switzerland (1)
Max Delbrück Center for Molecular Medicine in the Helmholtz association (MDC) Robert-Rössle-Straße 10 13125 Berlin (1)
Professor i molekylærbiologi og faglig leder av PROMEC Institutt for klinisk og molekylær medisin Fakultet for medisin og helsevitenskap geir.slupphaug@ntnu.no 72573076 91825455 Laboratoriesenteret, 231.05.034, Øya, Erling Skjalgssons g 1 (1)
Proteomics Lab. IREC (CSIC-UCLM-JCCM). 13005 - Ciudad Real. Spain (1)
UMR 1048-I2MC, Inserm, Université de Toulouse, UPS, Toulouse, France (1)
University of Fortaleza (1)
University of Vienna, Department of Ecogenomics and Systems Biology (1)
i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal. Departamento de Patologia, Faculdade de Medicina, Universidade do Porto, Portugal. P.CCC Porto Comprehensive Cancer Center Raquel Seruca, Portugal. (1)

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Mass Spectrometry Proteotyping-Based Detection and Identification of Staphylococcus aureus, Escherichia coli and Candida albicans in Blood

Bloodstream infections (BSIs), the presence of microorganisms in blood, are potentially serious conditions that can quickly develop into sepsis and life-threatening situations. When assessing proper treatment, rapid diagnosis is the key; besides clinical judgement performed by attending physicians, ...

ORGANISM(S): Candida albicans (Yeast) Escherichia coli Staphylococcus aureus

2021-07-20 | PXD023033 | Pride