Anaerobe - OmicsDI

Show results for

Unknown (669)
Genomics (189)
Transcriptomics (63)
Proteomics (20)
Metabolomics (7)
Models (2)
Other (2)
Clinical (1)

Organisms

Clostridioides difficile (6)
Homo sapiens (6)
Porphyromonas gingivalis (5)
Caldicellulosiruptor saccharolyticus (4)
Clostridium acetobutylicum (3)
Mus musculus (3)
Dichelobacter nodosus (2)
Bacteroides thetaiotaomicron (2)
Clostridium acetobutylicum ATCC 824 (2)
Acetivibrio thermocellus ATCC 27405 (2)
Phocaeicola vulgatus (1)
Veillonella parvula DSM 2008 (1)
Staphylococcus aureus subsp. aureus RN4220 (1)
Bacteroides fragilis 638R (1)
Neisseria gonorrhoeae F62 (1)
Thermotoga maritima MSB8 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Fusobacterium nucleatum (1)
Helicobacter pylori (1)
mixed sample (1)
Clostridium sporogenes ATCC 15579 (1)
[Clostridium] saccharolyticum WM1 (1)
Collinsella aerofaciens ATCC 25986 (1)
Oleidesulfovibrio alaskensis G20 (1)
[Clostridium] scindens (1)
Lactiplantibacillus plantarum WCFS1 (1)
Aggregatibacter actinomycetemcomitans (1)
Geobacter sulfurreducens (1)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Fusobacterium nucleatum subsp. nucleatum (1)

Organisms

Homo sapiens (7)
Clostridioides difficile (5)
Acetivibrio thermocellus ATCC 27405 (3)
Desulfuromonas acetoxidans (2)
Caldicellulosiruptor saccharolyticus (2)
Shewanella oneidensis (2)
Streptococcus pneumoniae (2)
sludge metagenome (2)
Escherichia coli (2)
Bacteria (2)
human gut metagenome (2)
Mus musculus (2)
Serratia marcescens LCT-SM213 (1)
Formosa agariphila KMM 3901 (1)
Bifidobacterium animalis subsp. lactis ATCC 27673 (1)
Anaeromyxobacter diazotrophicus (1)
Pasteurella multocida subsp. multocida str. P52VAC (1)
Desulforapulum autotrophicum HRM2 (1)
Methanobrevibacter boviskoreani JH1 (1)
Paenibacillus sp. Aloe-11 (1)
Morganella morganii SC01 (1)
Thermococcus onnurineus NA1 (1)
Thermoanaerobacter brockii (1)
Spirochaeta sp. ELBA (1)
Marinifilum sp. N1E240 (1)
Thermus scotoductus SA-01 (1)
Streptococcus sp. KHUD_020 (1)
Gemella sp. KHUD_019 (1)
Petrotoga mobilis SJ95 (1)
Serratia marcescens LCT-SM262 (1)

Repository

ENA (187)
biostudies-arrayexpress (35)
geo (31)
pride (18)
MetaboLights (6)
BioModels (2)
MassIVE (2)
GPMDB (1)
MetabolomicsWorkbench (1)

Tissue

Prokaryotic cell (2)
Bacterial cells (1)
Digestive gland (1)
Spore (1)
Permanent cell line cell (1)
Epithelial cell (1)
Cell culture (1)

Disease

Disease free (2)
Colorectal cancer, low anaerobic thresholdColorectaal kanker, lage anaerobe drempel (1)
Not Available (1)
Listeriosis (1)

Technology Type

Mass Spectrometry (18)
Shotgun proteomics (14)
Mass spectrometry (5)
Bottom-up proteomics (3)
Mass spectrometry assay (1)
NMR (1)
Metaproteomics (1)
Data-independent acquisition (1)
Gel-based experiment (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

GeneQuant (2)
Illumina NovaSeq X (2)
Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
HiSeq X Five (1)
BD GasPak 150 Jar (1)
Bactron IV SHEL LAB Anaerobic (1)
Variable Atmosphere Incubator (1)
Illumina HiSeq 4000 (1)
Instrument (1)
Synapt MS (1)
Q Exactive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2013 (10)
2010 (9)
2026 (8)
2011 (7)
2015 (6)
2024 (6)
2017 (6)
2022 (6)
2021 (5)
2019 (5)
2016 (4)
2008 (4)
2025 (4)
2023 (4)
2020 (3)
2007 (2)
2014 (1)
2012 (1)
2009 (1)
2006 (1)
2018 (1)

CHEBI ID

CHEBI:17568 (3)
CHEBI:15891 (3)
CHEBI:16704 (3)
CHEBI:24266 (2)
CHEBI:17992 (2)
CHEBI:17822 (2)
CHEBI:26271 (2)
CHEBI:25094 (2)
CHEBI:18237 (2)
CHEBI:16750 (2)
CHEBI:28044 (2)
CHEBI:29750 (2)
CHEBI:15318 (2)
CHEBI:18012 (2)
CHEBI:78320 (2)
CHEBI:16737 (2)
CHEBI:15756 (2)
CHEBI:17368 (2)
CHEBI:30769 (2)
CHEBI:85210 (1)
CHEBI:24329 (1)
CHEBI:25399 (1)
CHEBI:57429 (1)
CHEBI:170015 (1)
CHEBI:143095 (1)
CHEBI:139582 (1)
CHEBI:172431 (1)
CHEBI:18139 (1)
CHEBI:73676 (1)
CHEBI:17840 (1)

Metabolite Name

Uridine (2)
Serine (2)
Proline (2)
Lysine (2)
Guanosine (2)
Glutamate (2)
Arginine (2)
Histidine (2)
Phenylalanine (2)
Tyrosine (2)
Methionine (2)
Lactate (2)
TRANS-CINNAMALDEHYDE (1)
THYMIDINE 5-MONOPHOSPHATE (1)
OMEGA-HYDROXYDODECANOIC ACID (1)
N-acetyl-L-threonine (1)
INDOLE-3-PYRUVIC ACID (1)
GLUTARATE (1)
DEHYDROASCORBATE (1)
D-GLUCOSE 6-PHOSPHATE (1)
D-[+]-RAFFINOSE (1)
D-[+]-GLUCOSAMINE (1)
ADENOSINE 5-MONOPHOSPHATE (1)
3-METHYL-2-OXOVALERIC ACID (1)
2-METHYLMALEATE (1)
Leucic acid (1)
L-LEUCINE (1)
3-oxo-5beta-cholan-24-oic-acid (1)
7alpha-Hydroxy-5beta-cholan-24-oic acid (1)
Lithocholic acid (LCA) (1)

First Public Date

2013 (43)
2026 (19)
2025 (18)
2014 (17)
2020 (14)
2024 (13)
2015 (13)
2022 (11)
2021 (9)
2019 (7)
2023 (6)
2018 (6)
2017 (6)
2016 (5)

Modelling Approach

Constraint-based model (2)

Study status

Not yet recruiting (1)

Lab affiliation

The Gade Research Group for Infection and Immunity, Department of Clinical Science, Faculty of Medicine and Dentistry, University of Bergen, Bergen, Norway (2)
Laboratoire Pathogenèse des Bactéries Anaérobies, InstitutPasteur, Paris, France (1)
Department of Proteomics, Helmholtz Centre for Environmental Research – UFZ, Permoserstr. 15, 04318 Leipzig, Germany (1)
NTU (1)
Department of Molecular Pathology, Faculty of Military Health Sciences, University of Defense, Hradec Kralove, Czech Republic (1)
Institut für Mikrobiologie Dept. Mikrobielle Proteomik Universität Greifswald Felix-Hausdorff-Str. 8 17489 Greifswald (1)
Plant and Microbial Biology Department, Kleiner Lab, North Carolina State University, USA (1)
The Ohio State University Department of Microbiology (1)
Faculty of Biotechnology, Chemistry and Food Science, NMBU - Norwegian University of Life Sciences, Norway (1)
Genome Center of Wisconsin,Department of Chemistry, Department of Biomolecular Chemistry, and DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53706, USA Morgridge Institute for Research, Madison, WI 53706, USA (1)
Institute of Microbiology, Department of Microbial Proteomics, University of Greifswald, Germany (1)
Imperial College London, United Kingdom (1)
CEA-Marcoule, DRF-Li2D, 30200 Bagnols-sur-Cèze, France (1)
Norwegian University of Life Sciences (1)
Biological Sciences Dept, Mississippi State University, Mississippi State, 39762 (1)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (1)
Institute for Biological Resources and Marine Biotechnologies (CNR), Italian National Research Council, Messina, Italy (1)