Analytical biochemistry

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Unknown (4356)
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Organisms

Allexis (1056)
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Organisms

Mus musculus (4)
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mouse gut metagenome (1)

Repository

pride (1056)
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Tissue

Cell culture (239)
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Disease

Disease free (25)
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Tuberculosis (4)
Alzheimer's disease (3)
Chronic myeloid leukemia (3)
Colorectal cancer (3)
Influenza (3)
Leukemia (3)
Lysosomal storage disease (3)
Male infertility (3)
Pancreatic ductal adenocarcinoma (3)
Prostate adenocarcinoma (3)
Colorectal cancer (1)
Not Available (1)

Technology Type

Mass Spectrometry (1056)
Shotgun proteomics (558)
Bottom-up proteomics (262)
Data-dependent acquisition (138)
Affinity purification coupled with mass spectrometry proteomics (103)
Gel-based experiment (74)
Data-independent acquisition (61)
Chemical cross-linking coupled with mass spectrometry proteomics (34)
SWATH MS (33)
Mass spectrometry (28)
Top-down proteomics (24)
SRM/MRM (23)
Mass spectrometry assay (12)
All-ion fragmentation (8)
DiaPASEF (7)
HDMSE (7)
MSE (4)
NMR spectroscopy (3)
Affinity proteomics (3)
Glycoproteomics (2)
Mass spectrometry imaging (2)
Proteogenomics (2)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
Liquid Chromatography MS - negative - reverse phase (8)
Q Exactive (6)
Liquid Chromatography MS - positive - reverse-phase (4)
Orbitrap Fusion Lumos (3)
Flow injection analysis MS - positive (3)
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MicrOTOF-Q II ESI-Qq-TOF (Bruker) (3)
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Orbitrap ID-X (2)
Direct infusion MS - positive (2)
SYNAPT HDMS (Waters) (2)
Bruker (2)
Gas Chromatography MS - positive (2)
Instrument (1)
LTQ Orbitrap Velos (1)
MaXis (1)
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6550 Q-TOF LC-MS Agilent (1)
Liquid Chromatography MS - alternating - reverse phase - Exactive (Thermo Scientific) (1)
Gas Chromatography MS - positive - medium polarity - Agilent 6890 GC - LECO Pegasus III TOF MS (LECO) (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode) (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (positive mode) (1)
LECO Pegasus III, GCTOFMS (1)
Xevo TQ MS (Waters) (1)
GCMS-QP2010 Plus (Shimadzu) (1)
6530 Q-TOF LC/MS (Agilent) (1)
Orbitrap Fusion (Thermo Fisher Scientific)_negative (1)
Orbitrap Fusion (Thermo Fisher Scientific) (1)
PTR-MS (1)

Publication Date

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2018 (69)
2019 (46)
2016 (35)
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2010 (3)
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2012 (2)
2009 (2)
2006 (2)
2013 (1)
2007 (1)

CHEBI ID

CHEBI:30769 (13)
CHEBI:18186 (11)
CHEBI:15741 (11)
CHEBI:15428 (10)
CHEBI:6650 (10)
CHEBI:18012 (10)
CHEBI:33508 (10)
CHEBI:15756 (10)
CHEBI:18237 (9)
CHEBI:24898 (9)
CHEBI:28044 (9)
CHEBI:28300 (9)
CHEBI:7916 (9)
CHEBI:32816 (9)
CHEBI:30915 (9)
CHEBI:27897 (9)
CHEBI:17895 (9)
CHEBI:16958 (8)
CHEBI:27266 (8)
CHEBI:16335 (8)
CHEBI:25094 (8)
CHEBI:17568 (8)
CHEBI:16919 (8)
CHEBI:17295 (8)
CHEBI:17368 (8)
CHEBI:27570 (7)
CHEBI:17754 (7)
CHEBI:17148 (7)
CHEBI:30653 (7)
CHEBI:16865 (7)

Metabolite Name

Tyrosine (7)
Tryptophan (7)
Phenylalanine (6)
Histidine (5)
Uracil (5)
Citrulline (5)
Citric acid (5)
Malic acid (5)
Isoleucine (5)
Glutamine (5)
Creatine (5)
N-acetylalanine (4)
Lysine (4)
Arginine (4)
Lactic acid (4)
Beta-alanine (4)
Valine (4)
Myo-inositol (4)
Glycine (4)
Glycerol (4)
Kynurenine (4)
Pyruvic acid (4)
Succinic acid (4)
Asparagine (4)
Glyceric acid (4)
Suberic acid (4)
Glucose (4)
Azelaic acid (4)
Glutamic acid (4)
Creatinine (4)

First Public Date

2025 (2)
2013 (2)
2026 (1)
2020 (1)
2019 (1)
2018 (1)
2015 (1)
2014 (1)

Modelling Approach

Other (2)

Study status

Ongoing (1)

Lab affiliation

Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (36)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (17)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (11)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (10)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (8)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (8)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (6)
Department of Biochemistry, Biomedical Sciences Building, University of Bristol, Bristol, United Kingdom (6)
LMU Munich Plant Biochemistry and Physiology, Germany (6)
School of Biochemistry, Faculty of Life Sciences, University of Bristol,UK (6)
Dept. Proteomics and Signal Transduction Director at the Max-Planck Institute of Biochemistry (5)
Institute for Biochemistry, University of Cologne (5)
Clinical Proteomics Facility, Medical Biochemistry, Academic Medical Center, University of Amsterdam (4)
Department of Biochemistry and Biomedical Sciences McMaster University (4)
Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA (4)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Infection and Immunity Program Room 214, level 2, 15 Innovation Walk Monash Biomedicine Discovery Institute Monash University, Clayton Campus Clayton 3800 Victoria Australia (4)
Redox Metabolism, Institute for Biochemistry, University of Cologne (4)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (4)
Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany (3)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Denmark (3)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA (3)
Department of Biochemistry, Purdue University (3)
Department of Biochemistry, University of Cambridge (3)
Department of Physical Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland (3)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt; Frankfurt, Germany. (3)
Professor of Cell Biology and NHSBT Principal Investigator,School of Biochemistry,University of Bristol (3)
Univ. Bordeaux, Bordeaux Proteome, Bordeaux, France. (3)
University of Freiburg, Institute of Biology II, Biochemistry and Functional Proteomics (3)
Xiamen University (3)

Keyword

Adiro 100 mg (1)
Adiro 300 mg (1)

IsPrivate

False (2)

Modification

2x(15)N labeled L-lysine (4)
4x(15)N labeled L-arginine (4)
N6 (4)
4x(2)H labeled dimethylated residue (2)
N6-dimethyl-L-lysine (2)
+3amu) (1)
-17.026549 (1)
0.9840160012245178 (1)
15.994915 (1)
15.994915008544922 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.010565 (1)
57.02146530151367 (1)
6x(2)H labeled dimethylated L-arginine (1)

Study type

Transcription profiling by array (24)
Cell line - One-color microarray (1)
ChIP-chip by array (1)
RNA-seq of coding RNA (1)
Interventional (1)

Release Date

2022 (393)
2023 (384)
2021 (382)
2025 (382)
2020 (330)
2024 (328)
2019 (287)
2018 (265)
2017 (233)
2016 (208)
2015 (190)
2013 (165)
2014 (157)
2012 (123)
2011 (114)
2010 (110)
2008 (79)
2026 (69)
2009 (68)
2007 (46)
2005 (22)
2006 (21)
2004 (12)
2003 (5)
2000 (4)
2001 (3)
2002 (2)
1998 (1)

Location

Spain (1)

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Multi-wavelength analytical ultracentrifugation of biopolymer mixtures and interactions.

Not available

S-EPMC10276540 | biostudies-literature

AROMA-GC: Green Automated Plasma Metabolome Profiling

Metabolomics enables the comprehensive profiling of low–molecular weight metabolites that reflect the interplay between environmental exposures and endogenous biological processes. As the downstream output of genomic, transcriptomic, proteomic, and epigenomic networks, the metabolome provides the...

2026-08-24 | MTBLS13319 | MetaboLights

Resuspending samples in analytical ultracentrifugation.

Not available

S-EPMC7398841 | biostudies-literature

Pre-analytical Sample Quality Determines Performance of Plasma Proteomics Workflows for Biomarker Discovery

This dataset contains mass spectrometry-based proteomic analyses of human plasma samples processed through five distinct proteomics workflows: neat plasma, perchloric acid precipitation with neutralization (PCA-N), and three bead-based enrichment methods (SAX magnetic beads, Sera Sil 700 magnetic be...

ORGANISM(S): Homo sapiens (Human)

2025-08-21 | PXD063572 | Pride

Pre-analytical Sample Quality Determines Performance of Plasma Proteomics Workflows for Biomarker Discovery part02

ORGANISM(S): Homo sapiens (Human)

2025-08-21 | PXD063593 | Pride

Pre-analytical variables Lc-ms Plasma proteomics Bead-based enrichment Cellular contamination Sample quality

Development of a Certification Exam to Assess Undergraduate Students' Proficiency in Biochemistry and Molecular Biology Core Concepts.

Not available

S-EPMC8734381 | biostudies-literature

Recorded scan times can limit the accuracy of sedimentation coefficients in analytical ultracentrifugation.

Not available

S-EPMC3676908 | biostudies-literature

Fast proteomics with dia-PASEF and analytical flow-rate chromatography

The presented approach is a combination of analytical flow rate chromatography with ion mobility separation of peptide ions, data-independent acquisition, and raw data processing using the DIA-NN software suite, to conduct fast, low-cost proteomic experiments that only require moderate sample amount...

ORGANISM(S): Homo sapiens (Human) Escherichia coli

2023-07-03 | PXD040205 | Pride

Short gradient Dia-pasef Timstof Fast methods Plasma proteomics High-throughput Covid-19

Perspective on the Future Role of Aptamers in Analytical Chemistry.

Not available

S-EPMC10184572 | biostudies-literature

Improved measurement of the rotor temperature in analytical ultracentrifugation.

Not available

S-EPMC4051143 | biostudies-literature

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