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TranscriptomicsSaccharomyces cerevisiae 3' poly(A) site mapping
The use of alternative polyadenylation sites is common and affects the post-transcriptional fate of mRNA, including its stability, localization, and translation. Here we present a method for genome-wide and strand-specific mapping of poly(A) sites and quantification of RNA levels at unprecedented ef...
ORGANISM(S): Saccharomyces cerevisiae 
2013-01-10 | E-GEOD-40110 | biostudies-arrayexpress
TranscriptomicsThe CLE40 and CRN/CLV2 signaling pathways antagonistically control root meristem growth in Arabidopsis
Differentiation processes in the primary root meristem are controlled by several signaling pathways that are regulated by phytohormones or by secreted peptides. Long term maintenance of an active root meristem requires that the generation of new root meristem cells and the loss of cells from the mer...
ORGANISM(S): Arabidopsis thaliana 
2014-10-02 | E-GEOD-59167 | biostudies-arrayexpress
GenomicsThe Danish Reference Genome - GenomeDenmark data access committee
Data Access Committee EGAC00001000562
EGAC00001000562 | EGA
UnknownTranscription termination counteracts DNA damage after WEE1 inhibition.
Not available
S-EPMC12825307 | biostudies-literature
TranscriptomicsExpression of ATHB17 in Maize Increases Ear Weight at Silking
Transformation of the Arabidopsis ATHB17 gene into maize results in the expression of a truncated protein (smaller by 113 amino acids) that functions as a dominant-negative regulator that can modify activity of endogenous maize HD-Zip II transcription factors. This RNASeq experiment indicates that t...
ORGANISM(S): Zea mays 
2015-10-26 | E-GEOD-51742 | biostudies-arrayexpress
UnknownGlobal mRNA sequencing of human skeletal muscle: Search for novel exercise-regulated myokines.
Not available
S-EPMC5369209 | biostudies-literature
TranscriptomicsBATSeq of ESC-FCS/ESC-2i/NSC
Single-cell polyadenylation site quantification 48 single cells each of murine embryonic stem cells maintained in FCS+LIF medium ("ESC"), embryonic stem cells maintained in serum free, 2i containing medium ("2i") and neural stem cells ("NSC") were sequenced by BATSeq, a...
ORGANISM(S): Mus musculus 
2015-06-09 | E-GEOD-60768 | biostudies-arrayexpress
UnknownThe extracellular matrix proteoglycan fibromodulin is upregulated in clinical and experimental heart failure and affects cardiac remodeling.
Not available
S-EPMC6063439 | biostudies-literature
TranscriptomicsHuR- dependent regulation of mRNA splicing is essential for the B cell antibody response [RNA-Seq]
Post-transcriptional regulation of mRNA by the RNA binding protein HuR is required in B cells for the germinal centre reaction and for the production of class-switched antibodies in response to T-independent antigens. Transcriptome-wide examination of RNA isoforms, abundance and translation in HuR-d...
ORGANISM(S): Mus musculus 
2015-02-13 | E-GEOD-62129 | biostudies-arrayexpress
ProteomicsE.Coli spike in to human cell line MCF-7
Spike in of 3 different amounts of E.Coli to human cell line MCF-7 with TMT10plex quantification.
ORGANISM(S): Homo Sapiens (human) 
2020-03-28 | PXD013277 | JPOST Repository
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