Andersen J J - OmicsDI

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Unknown (2933)
Proteomics (108)
Transcriptomics (57)
Genomics (29)
Metabolomics (8)
Models (2)
Multiomics (2)

Organisms

Homo sapiens (106)
Mus musculus (22)
Arabidopsis thaliana (8)
Bos taurus (5)
Myxococcus xanthus DK 1622 (5)
Aspergillus niger (4)
Drosophila melanogaster (4)
Aspergillus oryzae (3)
Myxococcus xanthus (3)
Saccharomyces cerevisiae (3)
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Simiiformes sp. (1)
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Dehalococcoides sp. ANAS2 (1)
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Rattus norvegicus (1)
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synthetic construct (1)
288671 (1)
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Hordeum vulgare (1)
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 (1)
Leishmania major strain Friedlin (1)

Organisms

Homo sapiens (2)
Mus musculus (1)

Repository

pride (99)
biostudies-arrayexpress (57)
EGA (25)
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MassIVE (5)
PAXDB (3)
ENA (3)
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geo (1)
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Tissue

Cell culture (13)
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Breast cancer cell (1)
Breast cancer cell line (1)

Disease

Colon cancer (7)
Disease free (5)
Cholangiocarcinoma (4)
Breast cancer (3)
Primary sclerosing cholangitis (3)
Female reproductive system (2)
Malignant neoplasm of ovary (2)
Acute leukemia (1)
Barth syndrome (1)
Ciliopathy (1)
Colorectal cancer (1)
Complex partial epilepsy (1)
Cutaneous malignant melanoma 1 (1)
Eczema (1)
Liver disease (1)
Melanoma (1)
Parkinson's disease (1)
Polymyalgia rheumatica (1)
Prostate adenocarcinoma (1)
Rheumatoid arthritis (1)
Tuberculosis (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (99)
Shotgun proteomics (53)
Bottom-up proteomics (23)
Data-independent acquisition (10)
Mass spectrometry (6)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (6)
Gel-based experiment (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Top-down proteomics (2)
ION_TORRENT, Ion Torrent Proton (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq (1)
Mass spectrometry assay (1)
DiaPASEF (1)
SWATH MS (1)

Instrument Platform

Q Exactive (5)
Illumina HiSeq 2000 (2)
Q Exactive HF (2)
Gas Chromatography MS - (2)
Liquid Chromatography MS - positive - reverse phase (2)
MA900, Sony (1)
10x Chromium Controller (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
LCMS-IT-TOF (Shimadzu) (1)
Liquid Chromatography MS - negative - reverse phase (1)
MS Imaging - (1)
ESI-ION-TRAP (1)

Publication Date

2023 (19)
2012 (17)
2025 (17)
2022 (16)
2021 (13)
2024 (12)
2026 (10)
2013 (7)
2008 (7)
2017 (7)
2016 (6)
2014 (6)
2011 (6)
2009 (6)
2020 (5)
2018 (5)
2019 (5)
2010 (4)
2015 (3)
2007 (2)
2005 (1)
2004 (1)

UNIPROT ID/AC

35KD_MYCTU (3)
6PGL_MYCTU (3)
A85A_MYCTU (3)
A85B_MYCTU (3)
A85C_MYCTU (3)
ACCD_MYCTU (3)
ACDH_MYCTU (3)
ACDP_MYCTU (3)
ACEA_MYCTU (3)
ACG_MYCTU (3)
ACNA_MYCTU (3)
ACPM_MYCTU (3)
ACPS_MYCTU (3)
ACR_MYCTU (3)
ACYP_MYCTU (3)
ADD_MYCTU (3)
ADHB_MYCTU (3)
ADHC_MYCTU (3)
ADOK_MYCTU (3)
AHPC_MYCTU (3)
AHPD_MYCTU (3)
AHPE_MYCTU (3)
AK_MYCTU (3)
ALDH_MYCTU (3)
ALF_MYCTU (3)
ALR_MYCTU (3)
AMI4_MYCTU (3)
AMPA_MYCTU (3)
APA_MYCTU (3)
APEB_MYCTU (3)

CHEBI ID

CHEBI:15428 (2)
CHEBI:15756 (2)
CHEBI:16919 (2)
CHEBI:17327 (2)
CHEBI:17351 (2)
CHEBI:17368 (2)
CHEBI:22470 (2)
CHEBI:28822 (2)
CHEBI:28842 (2)
CHEBI:70744 (2)
CHEBI:10072 (1)
CHEBI:10096 (1)
CHEBI:10098 (1)
CHEBI:1012 (1)
CHEBI:10136 (1)
CHEBI:10137 (1)
CHEBI:1019 (1)
CHEBI:10214 (1)
CHEBI:10275 (1)
CHEBI:10417 (1)
CHEBI:105240 (1)
CHEBI:10542 (1)
CHEBI:109455 (1)
CHEBI:116735 (1)
CHEBI:1221 (1)
CHEBI:127343 (1)
CHEBI:12936 (1)
CHEBI:131145 (1)
CHEBI:131184 (1)
CHEBI:131528 (1)

Metabolite Name

Arachidic acid (2)
Glycine (2)
Glycylproline (2)
Hypoxanthine (2)
Palmitic acid (2)
Phytol (2)
Stearic acid (2)
Succinate (2)
(+)-12-(2-Cyclopenten-1-yl)-2-dodecanone (1)
(+)-2,7-Dideoxypancratistatin (1)
(+)-Piperitone/d-Piperitone (1)
(+)-Prosopinine (1)
(+)-copalyl diphosphate (1)
(+)-trans-Carveol glucoside (1)
(+)TAN-67 (1)
(+/-)-(Z)-2-(5-Tetradecenyl)cyclobutanone (1)
(+/-)-Dihydrofarnesol (1)
(+/-)-Pelletierine (1)
(+/-)11(12)-EET Ethanolamide (1)
(-)-Solenopsin A (1)
(12S,15S)-15-O-Demethyl-10,29-dideoxy-11,12-dihydro-striatin C (1)
(13R,14R)-7-Labdene-13,14,15-triol (1)
(13R,14R)-8-Labdene-13,14,15-triol (1)
(1S,2R,4S)-(-)-Bornyl acetate (1)
(1S,2S,4R,8S)-p-Menthane-1,2,8,9-tetrol 2-glucoside (1)
(2'S)-Deoxymyxol 2'-(2,4-di-O-methyl-alpha-L-fucoside) (1)
(2'S)-Deoxymyxol 2'-alpha-L-fucoside (1)
(23S,24S)-17,23-Epoxy-24,29-dihydroxy-27-norlanost-8-ene-3,15-dione (1)
(24E)-15alpha-Acetoxy-3alpha-hydroxy-23-oxo-7,9(11),24-lanostatrien-26-oic acid (1)
(24E)-3alpha-Acetoxy-15alpha-hydroxy-23-oxo-7,9(11),24-lanostatrien-26-oic acid (1)

First Public Date

2014 (2)
2018 (1)

Modelling Approach

Constraint-based model (1)
Physiologically based pharmacokinetic model (1)

Lab affiliation

MBG, Aarhus University, Denmark (4)
EPFL (3)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (3)
Clinical Chemistry, Department of Translational Medicine, Lund University, Skane University Hospital Malmö, 205 02 Malmö, Sweden. (2)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia (2)
IMBA - Institute of Molecular Biotechnology Dr. Bohrgasse 3 1030 Vienna Austria (2)
Laboratory of Malaria and Vector Research, NIAID, NIH (2)
1. School of Natural Sciences, Macquarie University, Sydney, NSW 2109, Australia 2. Institute for Glyco-core Research (iGCORE), Nagoya University, Nagoya, Japan (1)
1.Precision Vaccines Program, Division of Infectious Diseases, Boston Children’s Hospital, Boston, MA, USA. 2. Department of Pediatrics, Harvard Medical School, Boston, MA, USA. (1)
Aarhus University, Department of Molecular Biology and Genetics (1)
Aarhus University. Denmark (1)
Associate Professor of Oncological Sciences Huntsman Cancer Institute at the University of Utah (1)
CIC bioGUNE Proteomics Platform, Bizkaia Tech. Park. Build 800 (1)
Cardio-Thoracic Translational Medicine (CTTM) Lab, Department of Surgical Sciences, Uppsala University, 752 37 Uppsala, Sweden (1)
Centre for Cellular and Molecular Physiology, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7BN, United Kingdom (1)
Charles Perkins Centre, School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia. (1)
Copenhagen University - Novo Nordisk Foundation Center for Protein Research (1)
Danish Cancer Society The Danish Cancer Society Research Center Copenhagen, Denmark (1)
Department Molecular Medicine and Medical Biotechnology, University of Naples (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark (1)
Department of Biomedical Sciences, University of Copenhagen, Denmark (1)
Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, DK-5000 Odense C, Denmark (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America (1)
Department of Chemistry and Biomolecular Sciences Macquarie University Sydney, NSW 2109 Australia (1)
Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic (1)
Department of Life Sciences and Systems Biology, University of Turin (1)
Department of Molecular Biology and Genetics (1)
Department of Molecular Biology, Radboud Institute for Molecular Life Sciences (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Modification

4x(2)H labeled dimethylated L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (40)
RNA-seq of coding RNA (5)
ChIP-chip by tiling array (4)
Other (2)
RNA-seq of coding RNA from single cells (2)
MicroRNA profiling by high-throughput sequencing (1)
RNAi profiling by array (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)

Release Date

2022 (348)
2023 (304)
2021 (302)
2025 (301)
2024 (264)
2020 (232)
2019 (180)
2018 (171)
2017 (150)
2016 (138)
2015 (93)
2012 (90)
2014 (89)
2013 (70)
2011 (55)
2026 (47)
2009 (37)
2010 (34)
2008 (28)
2007 (20)
2006 (12)
2005 (7)
2002 (6)
2004 (5)
2003 (3)
1999 (2)
2001 (1)
1998 (1)

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Network-based analysis of carbohydrate-active gene transcription in Aspergillus niger

Transcriptomics was performed on batch cultivations of A. niger grown on three monosaccharides and three complex carbohydrates with defined compositions as to allow the detection of cross-induction if present, and for demonstration of how enzyme interaction graphics can be used to visualize the glob...

ORGANISM(S): Aspergillus niger

2012-03-28 | E-GEOD-11930 | biostudies-arrayexpress

The tobacco carcinogen nitrosamine induces a differential gene expression response in tumour susceptible A/J and resistant C3H mouse lungs.

Not available

S-EPMC3587785 | biostudies-literature

Study of the response of Aspergillus niger to three levels of ambient pH

The multiple modes of response to ambient pH were explored and new regulatory structures determined. Biological triplicates from the mid-exponential growth phase of controlled bioreactor batch-cultivations of A. niger.

ORGANISM(S): Aspergillus niger

2009-05-18 | E-GEOD-11725 | biostudies-arrayexpress

Andersen-Tawil Syndrome With Novel Mutation in KCNJ2: Case Report.

Not available

S-EPMC8842678 | biostudies-literature

Assessment of cerebral drug occupancy in humans using a single PET-scan: A [¹¹C]UCB-J PET study.

Not available

S-EPMC11369007 | biostudies-literature

Gene Expression Data from Prefrontal Cortex and Nucleus Accumbens from Inbred Strains of Mice

Catechol-O-methyltransferase (COMT) is an ubiquitously expressed enzyme that maintains basic biologic functions by inactivating catechol substrates. In humans, polymorphic variance at the COMT locus has been associated with modulation of pain sensitivity (Andersen & Skorpen, 2009) and risk for devel...

ORGANISM(S): Mus musculus

2010-02-23 | E-GEOD-20160 | biostudies-arrayexpress

RNAi knock down of known nonsense-mediated mRNA decay (NMD) factors in Drosophila cells

All eukaryotes studied to date have the capacity to detect and degrade mRNAs harboring premature translation termination codons (PTCs) in a process called nonsense-mediated mRNA decay (NMD) (reviewed in Wagner E & Lykke-Andersen J, 2002). This surveillance system allows the cell to prevent the expre...

ORGANISM(S): Drosophila melanogaster

2005-11-01 | E-MEXP-202 | biostudies-arrayexpress

Case report: Mexiletine suppresses ventricular arrhythmias in Andersen-Tawil syndrome.

Not available

S-EPMC9453449 | biostudies-literature

Efficacy of 75% alcohol in pretreatment of the Andersen sampler in trapping maximum airborne microbes.

Not available

S-EPMC7781652 | biostudies-literature

Systematic Discovery of TLR Signaling Components Delineates Viral-Sensing Circuits.

Chevrier N, Mertins P, Artyomov MN, Shalek AK, Iannacone M, Ciaccio MF, Gat-Viks I, Tonti E, DeGrace MM, Clauser KR, Garber M, Eisenhaure TM, Yosef N, Robinson J, Sutton A, Andersen MS, Root DE, von Andrian U, Jones RB, Park H; Carr SA, Regev A, Amit I, Hacohen N. Cell, 2011, 147(4) 853-867. doi: 10...

2013-12-10 | MSV000078507 | MassIVE

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3137 Results

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