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TranscriptomicsTranscription profiling of human pleural mesothelioma versus parietal and visceral pleura
Genome-wide profile of pleural mesothelioma versus parietal and visceral pleura
ORGANISM(S): Homo sapiens 
2009-01-01 | E-MTAB-47 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of rat bladder after inoculation with bladder cancer cells
Rat bladder cancer cells (AY-27 cell line) were inoculated intravesically into syngeneic female Fischer rats. The bladder was analyzed by histology and Affymetrix GeneChips and compared to bladders from sham operated and normal rats.
ORGANISM(S): Rattus norvegicus 
2009-04-22 | E-MTAB-104 | biostudies-arrayexpress
TranscriptomicsTimes series of cells synchronized by double thymidine block
HaCat cell cycle experiment: During the somatic cell cycle, DNA and epigenetic modifications in DNA and histones are copied to daughter cells. DNA replication timing is tightly regulated and linked to GC content, chromatin structure, andgene transcription, but how maintenance of histone modification...
ORGANISM(S): Homo sapiens 
2011-12-31 | E-MTAB-454 | biostudies-arrayexpress
TranscriptomicsNew specific molecular targets for radiochemotherapy in colorectal cancer
A promising treatment for patients with advanced colorectal cancer is preoperative radiochemotherapy. The early side effects of this treatment have been considered to be acceptable. The aim of this study was to identify the effects of preoperative radiochemotherapy (PRT) on gene expression in tumour...
ORGANISM(S): Homo sapiens 
2010-04-09 | E-GEOD-15781 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of two rat cell lines using different blocking reagents and doses to optimize cDNA microarray procedures without using an external standard
We performed a dye-swap microarray experiment using a total of 24 Rat 15k cDNA duplicates microarrays. The study included RNA from samples with high expected differential gene expression termed ‘high contrasts’ compared to self-self hybridization (rat cell lines AR42J and NRK52E). We than optimized ...
ORGANISM(S): Rattus norvegicus 
2007-01-19 | E-TABM-202 | biostudies-arrayexpress
TranscriptomicsDefining a molecular roadmap of cellular reprogramming into iPS cells [miRNA profiling]
Factor induced reprogramming is a slow and inefficient process with only rare cells progressing towards induced pluripotent stem cells (iPSCs). Owing to these restraints, mechanistic studies have been limited to analyses of heterogeneous bulk populations undergoing reprogramming and partially reprog...
ORGANISM(S): Mus musculus 
2012-12-20 | E-GEOD-42475 | biostudies-arrayexpress
GenomicsDefining a molecular roadmap of cellular reprogramming into iPS cells [ChIP-Seq]
Factor induced reprogramming is a slow and inefficient process with only rare cells progressing towards induced pluripotent stem cells (iPSCs). Owing to these restraints, mechanistic studies have been limited to analyses of heterogeneous bulk populations undergoing reprogramming and partially reprog...
ORGANISM(S): Mus musculus 
2012-12-20 | E-GEOD-42477 | biostudies-arrayexpress
TranscriptomicsDefining a molecular roadmap of cellular reprogramming into iPS cells [mRNA profiling]
Factor induced reprogramming is a slow and inefficient process with only rare cells progressing towards induced pluripotent stem cells (iPSCs). Owing to these restraints, mechanistic studies have been limited to analyses of heterogeneous bulk populations undergoing reprogramming and partially reprog...
ORGANISM(S): Mus musculus 
2012-12-20 | E-GEOD-42379 | biostudies-arrayexpress
TranscriptomicsTranscription profiling time series of Bacillus cereus from cultures grown in media with bile salts
RNA was isolated from control and bile salt cultures 15, 30, and 60 minutes after shift (named C15,C30,C60 and BC15,BS30,BS60, repectively) and hybridized against the reference RNA (C0) isolated immediatly after the shift.
ORGANISM(S): Bacillus cereus 
2007-05-17 | E-MEXP-896 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of wild type B. cereus and a deltion mutant of the PlcR regulator at two time points
Comparison at two different timepoints of expression profiles of wild_type Bacillus and a deletion mutant of the PlcR regulator. Additional processed data can be found in the FTP directory for this experiment f...
ORGANISM(S): Bacillus cereus 
2008-06-01 | E-MEXP-1472 | biostudies-arrayexpress
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