App - OmicsDI

Show results for

Unknown (13037)
Transcriptomics (694)
Genomics (682)
Proteomics (298)
Clinical (28)
Metabolomics (21)
Other (15)
Models (7)
Methylation profiling (7)

Organisms

Mus musculus (381)
Homo sapiens (245)
Schizosaccharomyces pombe (29)
Sus scrofa (24)
Arabidopsis thaliana (23)
Rattus norvegicus (13)
Drosophila melanogaster (12)
Danio rerio (8)
Medicago truncatula (6)
Bos taurus (6)
Oryza sativa (4)
Caenorhabditis elegans (4)
Tetrahymena thermophila (3)
Hordeum vulgare (3)
Gallus gallus (3)
Zea mays (2)
Saccharomyces cerevisiae S288C (2)
Glycine max (2)
Saccharomyces cerevisiae (2)
Macaca mulatta (1)
Trichinella spiralis (1)
Actinobacillus pleuropneumoniae serovar 1 str. 4074 (1)
Gossypium tomentosum (1)
Cichorium intybus (1)
Carcinus maenas (1)
Cyanothece sp. (1)
Notophthalmus viridescens (1)
Bombyx mori (1)
Dysidea avara (1)
Pseudomonas fluorescens (1)

Organisms

Mus musculus (295)
Homo sapiens (108)
mouse gut metagenome (6)
Sus scrofa (5)
Danio rerio (5)
Saccharomyces cerevisiae (5)
Drosophila melanogaster (4)
Arabidopsis thaliana (4)
Rattus norvegicus (4)
Actinobacillus pleuropneumoniae (3)
Alcyonium (2)
Callithrix jacchus (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Ictalurus punctatus (1)
Lactococcus muris (1)
Cricetulus griseus (1)
Ixodes ricinus (1)
Xenopus laevis (1)
Meriones unguiculatus (1)
Lates calcarifer (1)
Streptococcus pneumoniae (1)
Medicago truncatula (1)
Caenorhabditis elegans (1)
Bacillus paranthracis (1)
Equus caballus (1)
Mycobacterium (1)
Ovis aries (1)
Bacteria (1)
Staphylococcus aureus (1)
Bos taurus (1)

Repository

ENA (624)
biostudies-arrayexpress (386)
geo (371)
pride (243)
MassIVE (24)
iProX (22)
MetaboLights (16)
EGA (14)
BioModels (7)
jPOST (7)
MetabolomicsWorkbench (4)
ExpressionAtlas (2)
GPMDB (2)
PanoramaPublic (2)
GNPS (1)

Tissue

Brain (71)
Cell culture (37)
Cerebrospinal fluid (13)
Blood plasma (9)
Liver (8)
Epithelial cell (7)
Blood cell (6)
Permanent cell line cell (6)
Cell suspension culture (5)
Blood serum (4)
Colon (4)
Heart (4)
Hepatocyte (4)
Microglial cell (4)
Skin (4)
Embryonic stem cell (3)
HeLa cell (3)
Macrophage (3)
Plant cell (3)
T cell (3)
Whole body (3)
Brain (2)
Astrocyte (2)
Astrocyte of the cerebral cortex (2)
Blood (2)
Embryo (2)
Fibroblast (2)
Hippocampal neuron (2)
Liver (1)
Blood (1)

Disease

Alzheimer's disease (45)
Colorectal Neoplasms (10)
Colon cancer (3)
Parkinson's disease (2)
Lung cancer (2)
Multiple sclerosis (1)
Rett syndrome (1)
Giant cell glioblastoma (1)
Abdominal aortic aneurysm (1)
Leukemia (1)
Normal (1)
Neuroblastoma (1)
Health and wellbeing after breast (1)
Anxiety (1)
CRC (1)
Patients diagnosed with colorectal (1)
Low anterior resection syndrome (1)
The project is in the primary prevention, a study of diseases / health problems does not take place (1)
Cancer Colorectal (1)
Diabetes Mellitus, Type 2 (1)
Colostomy patients after colorectal cancer surgery (1)
Patients with gastro-intestinal or lung cancer scheduled for surgery (1)
Benign colorectal diseases (1)
Colonoscopy (1)
Malignant neoplasm of rectosigmoid junction (1)
Breast cancer and colorectal cancer survivors (1)
Colorectal (1)
Colorectal cancer surgery (1)
Inflammatory Bowel Diseases (1)
Intestinal Neoplasms (1)

Technology Type

Mass Spectrometry (245)
Shotgun proteomics (126)
Bottom-up proteomics (65)
Data-dependent acquisition (26)
Data-independent acquisition (26)
Affinity purification coupled with mass spectrometry proteomics (20)
SWATH MS (16)
Mass spectrometry (10)
Gel-based experiment (10)
Top-down proteomics (7)
Mass spectrometry assay (6)
All-ion fragmentation (3)
NMR (2)
ESI (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
HDMSE (2)
Mass spectrometry imaging (2)
Illumina HiSeq 2500, ILLUMINA (1)
DiaPASEF (1)
MSE (1)
SRM/MRM (1)

Instrument Platform

NextSeq 500 (19)
Illumina NovaSeq 6000 (17)
Illumina HiSeq 2500 (13)
Illumina HiSeq 2000 (8)
Q Exactive (5)
NextSeq 550 (4)
Orbitrap Fusion (4)
Q Exactive HF (4)
DNBSEQ-G400 (3)
Illumina HiSeq 4000 (3)
Orbitrap Eclipse (3)
Nanostring GeoMx spatial profiler (2)
Illumina Genome Analyzer IIx (2)
418 [Affymetrix] (2)
- (2)
BGISEQ-500 (2)
Illumina MiSeq (2)
QTRAP 6500+ (2)
Instrument (2)
LTQ Orbitrap Elite (2)
Nanostring GeoMx® spatial profiler (1)
ScanArray 5000 [PerkinElmer] (1)
GenePix 4000A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Illumina MiniSeq (1)
NextSeq 2000 (1)
Illumina iSeq 100 (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 3000 (1)

Publication Date

2025 (110)
2024 (96)
2026 (87)
2023 (83)
2022 (78)
2014 (70)
2020 (64)
2021 (61)
2015 (59)
2013 (43)
2010 (38)
2016 (37)
2018 (36)
2012 (35)
2019 (34)
2017 (33)
2011 (32)
2008 (25)
2009 (18)
2007 (12)
2006 (4)
2005 (4)
2004 (3)
2002 (3)

UNIPROT ID/AC

P05067 (4)
Q9NZ42 (2)
P56817 (1)
Q07954 (1)
P02649 (1)
O00330 (1)
P37840 (1)

CHEBI ID

CHEBI:15351 (4)
CHEBI:25350 (2)
CHEBI:11814 (2)
CHEBI:16113 (2)
CHEBI:15531 (2)
CHEBI:15361 (2)
CHEBI:24933 (1)
CHEBI:14484 (1)
CHEBI:6074 (1)
CHEBI:24932 (1)
CHEBI:1687 (1)
CHEBI:42317 (1)
CHEBI:1567 (1)
CHEBI:23616 (1)
CHEBI:20097 (1)
CHEBI:13960 (1)
CHEBI:23093 (1)
CHEBI:3593 (1)
CHEBI:57884 (1)
CHEBI:23094 (1)
CHEBI:3588 (1)
CHEBI:1566 (1)
CHEBI:20095 (1)
CHEBI:14734 (1)
CHEBI:25843 (1)
CHEBI:3590 (1)
CHEBI:57802 (1)
CHEBI:13961 (1)
CHEBI:46136 (1)
CHEBI:23096 (1)

Metabolite Name

Hypoxanthine (4)
Coumaric acid (3)
Pyridine (3)
Cinnamic acid (3)
Uracil (3)
Indoxyl sulfate (3)
5-Methylcytosine (3)
Eicosapentaenoic acid (3)
Pantothenic acid (3)
Taurine (3)
Tyrosine (3)
Cytosine (3)
Aspartic acid (3)
Cytidine (3)
Uridine (3)
Creatine (3)
2-Arachidonyl glycerol ether (2)
2-Nitrophenyl octyl ether (2)
5-Amino-1-[carboxy(methyl)amino]pentane-1,1,2,2,3,3,4,4,5-nonacarboxylic acid (2)
Olamufloxacin (2)
PC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (2)
Endoxifen O-glucuronide (2)
MG(0:0/16:1(9Z)/0:0) (2)
Benzoin (2)
Olopatadine (2)
Thiamine monophosphate (2)
Cytokinin B (2)
Dopamine 3-O-sulfate (2)
10-HDA (2)
5'-phosphoribosyl-N-formylglycinamide (2)

First Public Date

2025 (96)
2024 (94)
2026 (82)
2023 (61)
2022 (61)
2020 (56)
2021 (47)
2014 (32)
2019 (30)
2017 (21)
2018 (19)
2015 (12)
2016 (8)
2013 (4)
2012 (1)

Modelling Approach

Ordinary differential equation model (6)
Constraint-based model (1)

Study status

Completed (9)
Recruiting (7)
Not yet recruiting (6)
Withdrawn (2)
Other (1)
Enrolling by invitation (1)
Active, not recruiting (1)
Not provided (1)

Lab affiliation

DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (4)
1VIB-UGent Center for Medical Biotechnology, VIB, 9052 Ghent, Belgium 2Department of Biomolecular Medicine, Ghent University, 9052 Ghent, Belgium (3)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (3)
Burns and Trauma Research,School of Biomedical Sciences, Queensland University of Technology (2)
Carnegie Mass Spectrometry Facility (2)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (2)
DZNE Munich / TU Munich (2)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark (2)
Department of Biology University of Fribourg Switzerland (2)
Department of Neuroscience of Disease, Brain Research Institute, Niigata University (2)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic ORCID logohttp://orcid.org/0000-0001-6976-8446 (2)
Departments of Biochemistry and Neurology Emory University School of Medicine (2)
Graduate School of Pharmaceutical Sciences, Tohoku University (2)
Institute of Bioinformatics, Bangalore, India (2)
Key Laboratory of Modern Toxicology of Shenzhen, Shenzhen Center for Disease Control and Prevention, No. 8, Longyuan Road, Nanshan District, Shenzhen, China 518055. (2)
Shenzhen Center for Disease Control and Prevention (2)
University of Toronto (2)
- Inst. of Neuroscience and Physiology, Dept. of Psychiatry and Neurochemistry, The Sahlgrenska Academy at University of Gothenburg, Mölndal, Sweden - Clinical Neurochemistry Laboratory, Sahlgrenska University Hospital, Mölndal, Sweden - Department of Molecular Neuroscience, UCL Institute of Neurology, Queen Square, London, UK (1)
1 Children’s Cancer and Blood Foundation Laboratories, Departments of Pediatrics, and Cell and Developmental Biology, Drukier Institute for Children’s Health, Meyer Cancer Center, Weill Cornell Medicine, New York, NY, USA (1)
1) Department of Chemistry, Stanford University, Stanford, California, USA 2) Howard Hughes Medical Institute, Stanford, California, USA (1)
1. CERVO Brain Research Centre, Quebec Mental Health Institute; Québec, QC, G1E 1T2, Canada. 2. Department of Psychiatry & Neuroscience, Université Laval; Québec, QC, G1V 0A6, Canada. (1)
1. Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Dortmund, Germany 2. Pediatric Neurology, University Hospital Essen, University of Duisburg-Essen, Faculty of Medicine, Essen, Germany (1)
1Dept. of Pharmacology and Toxicology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR 72205 2Dept. of Environmental and Occupational Health, Fay W. Boozman College of Public Health, University of Arkansas for Medical Sciences, Little Rock, AR 72205 (1)
1Division of Radiation Health, 2Department of Pharmaceutical Sciences, 3Neurobiology & Developmental Sciences, (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA (1)
Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei 230036, China. (1)
Assistant Professor of Neurology Institute for Cell Engineering Johns Hopkins University School of Medicine (1)
Associate Investigator, Metabolic Regulation of Cell Fate, inStem (1)
Associate Professor of Systems Biology Department of Molecular Medicine University of Pavia 9, via A Ferrata/ 27100 Pavia / Italy (1)
Associate Professor, Department of Chemistry, Vanderbilt University (1)

Keyword

Colonoscopy (3)
Bowel preparation (2)
Coping (2)
Symptom management (2)
MHealth (2)
WhatsApp messenger (1)
Crc screening (1)
Screening update rate (1)
M-Health (1)
Smart Phone Application (1)
Cancer Screening Tests (1)
Motivational Interviewing (1)
Mobile Health (1)
Vinehealth digital app (1)
Distress (1)
Family medicine (1)
Genetics (1)
Personalized medicine (1)
Smart phone application (1)
Bowel Preparation (1)
African Americans (1)
Telemedicine (1)
Digital (1)
Gastroenterology (1)
Family history (1)
Patient satisfaction (1)
Prevention (1)
Early Detection of Cancer (1)
Diet (1)
Colorectal cancer screening (1)

IsPrivate

False (7)

Submitter Keywords

Not Peer Reviewed (1)

Classification

bacteria (4)

Study type

Transcription profiling by array (229)
RNA-seq of coding RNA (51)
ChIP-seq (13)
RNA-seq of non coding RNA (12)
ChIP-chip by tiling array (10)
Other (10)
RNA-seq of coding RNA from single cells (8)
Methylation profiling by array (6)
MicroRNA profiling by high throughput sequencing (5)
Comparative genomic hybridization by array (5)
ATAC-seq (4)
RNA-seq of total RNA (4)
Cell line - High-throughput sequencing (3)
Spatial transcriptomics by high-throughput sequencing (3)
Unknown experiment type (2)
Plant - High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
RNAi profiling by array (2)
DNA-seq (2)
Cell line - Single-cell sequencing (1)
Animal - One-color microarray (1)
High-throughput sequencing (1)
Whole chromosome random sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Capture-C (1)
CLIP-seq (1)
RIP-seq (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)

Release Date

2025 (1852)
2022 (1831)
2023 (1701)
2021 (1547)
2024 (1472)
2020 (1208)
2019 (813)
2018 (655)
2017 (440)
2016 (339)
2015 (274)
2014 (233)
2026 (212)
2013 (148)
2012 (146)
2011 (129)
2010 (129)
2009 (82)
2008 (70)
2007 (49)
2006 (26)
2005 (22)
2004 (14)
2002 (8)
2001 (6)
1999 (5)
2003 (4)
2000 (4)
1998 (4)

Location

United States (7)
United Kingdom (5)
Canada (3)
Hong Kong (2)
Germany (2)
Spain (2)
Netherlands (2)
Iran (1)
Andorra (1)
Latvia (1)
Slovenia (1)
Taiwan (1)
China (1)
Argentina (1)
Belgium (1)
Australia (1)

Previous page
1 / 1479
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1479
Next page

Sort by:

Relevance

Page size

Transcriptional Profiling of Neuronal APP/APLP2 Double-Conditional Knockout Mice.

Gene expression analysis of 2-month-old APP/APLP2 double-conditional Knockout (N-dCKO) mice and littermate APLP2 knockout controls, APP knockout and wildtype controls. Mouse hippocampus were dissected for RNA extraction and hybridization on Affymetrix microarrays.

ORGANISM(S): Mus musculus

2013-07-10 | E-GEOD-48622 | biostudies-arrayexpress

Comparative transcriptome profiling of Amyloid Precursor Protein APP family members in the adult cortex

The Î²-amyloid precursor protein APP and the related APLPs, undergo complex proteolytic processing giving rise to several fragments. Whereas it is well established that AÎ² accumulation is a central trigger for Alzheimer disease (AD), the physiological role of APP family members and their diverse pr...

ORGANISM(S): Mus musculus

2011-03-18 | E-GEOD-25926 | biostudies-arrayexpress

Data from plasma metabolome analysis of APP-KI and Wild type mice treated with B. breve MCC1274

Not available

ORGANISM(S): Mus musculus

ST002153 | MetabolomicsWorkbench

Comparative transcriptome analysis of APPs?-DM and APLP2-KO brains

Despite its key role in Alzheimer pathogenesis, the physiological function(s) of the amyloid precursor protein (APP) and of its proteolytic fragments are still poorly understood. The secreted APPs? ectodomain has been shown to be involved in neuroprotection and synaptic plasticity. The ?-secretase g...

ORGANISM(S): Mus musculus

2011-05-10 | E-GEOD-27888 | biostudies-arrayexpress

miRNA sequencing of exosomes derived from N2A and APP-N2A cells

APP misexpression plays a crucial role in triggering a complex pathological cascade, leading to Alzheimer’s disease (AD). The aim of this study is for determine the influence of APP ectopic expression on the miRNA profiles of neuronal exosomes. In study, miRNA sequencing was done using the exosomes ...

ORGANISM(S): Homo sapiens

2022-03-30 | E-MTAB-11106 | biostudies-arrayexpress

Ago-APP: a GW peptide-based Argonaute affinity capture strategy

During microRNA (miRNA)-guided gene silencing, Argonaute (Ago) proteins interact with a member of the TNRC6/GW protein family. Here we used a short GW protein-derived peptide fused to GST and demonstrate that it binds to Ago proteins with high affinity. This allows for the simultaneous isolation of ...

ORGANISM(S): Arabidopsis thaliana

2015-09-08 | E-GEOD-70553 | biostudies-arrayexpress

Changes in gene expression induced by apple polyphenol (APP)

γδ T cells are lymphocytes that function in both innate and adaptive immune responses, and our laboratory has previously reported that both bovine and human γδ T cells are primed for secondary responses by tannin components of the unripe apple peel (APP). In this report we began to investigate the ...

ORGANISM(S): Bos taurus

2010-08-10 | E-GEOD-13321 | biostudies-arrayexpress

Transcription profiling of mouse APP transgenic mouse model of Alzheimers disease treated with BDNF

We examined transgenic (TG) mice expressing human APP695 bearing the double Swedish (671KM>NL) and Indiana (717V>F) amyloid precursor protein (APP) mutations. Lentiviral vectors constitutively expressing BDNF-GFP under control of the CMV/ÃŸ-actin hybrid promoter or GFP alone were injected into the e...

ORGANISM(S): Mus musculus

2009-02-01 | E-GEOD-14499 | biostudies-arrayexpress

Delta-cleavage verification in recombinant human APP

LC-MS/MS analysis of recombinant APP preparations treated with PDAPP/KO brain to document the cleavage of APP by delta-secretase.

ORGANISM(S): Homo sapiens (Human)

2025-09-11 | PXD067552 | Pride

Human app Sorcs2

DNA methylation profiles across different brain regions in APP/PSEN1 mice

Genome wide DNA methylation profiling of normal and APP/PSEN1 mice. A custom Illumina Golden Gate DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 800 CpGs. Bisulphite converted DNA from the 96 samples were hybridised to the Illumina custom golden gate DNA m...

ORGANISM(S): Mus musculus

2015-12-05 | E-GEOD-42745 | biostudies-arrayexpress

Previous page
1 / 1479
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1479
Next page

Sort by:

Relevance

Page size

14790 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Study status

Lab affiliation

Tags

Keyword

IsPrivate

Submitter Keywords

Classification

Study type

Release Date

Location

OmicsDI is part of the ELIXIR infrastructure

Tweets