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MetabolomicsMetabolomic insights into the browning of the peel of bagging 'Rui Xue' apple fruit

BACKGROUND: Bagging is one of the most important techniques for the production of high-quality fruits. In the act of cultivation, we found a new kind of browning in peel of the apple fruit that occurs before harvest and worsens during the storage period. There are many studies on...

2021-04-09 | MTBLS2384 | MetaboLights
TranscriptomicsInfection of apple by Apple stem grooving virus leads to extensive alterations in gene expression patterns but no disease symptoms
To understand the molecular basis of viral diseases, transcriptome profiling has been widely used to correlate host gene expression change patterns with disease symptoms during viral infection in many plant hosts. We used infection of apple by Apple stem grooving virus (ASGV), which produces no dise...
ORGANISM(S): Malus domestica 
2014-04-17 | E-GEOD-53825 | biostudies-arrayexpress
ProteomicsApple SWATH-MS - Apple is one of the most popular fruit crops world-wide and its skin color is an important quality consideration essential for commercial value
Apple is one of the most popular fruit crops world-wide and its skin color is an important quality consideration essential for commercial value. However, the strategy on genetic breeding for red skin apple and the genetic basis of skin color differentiation is very limited and still largely unknown....
ORGANISM(S): Malus domestica 
2019-06-18 | PXD011132 | Pride
Apple Swath-ms 
MetabolomicsField study of the fire blight resistant cisgenic apple line C44.4.146

Cisgenesis, the genetic modification of a plant with genes from a sexually compatible plant, was used to confer fire blight resistance to the cultivar 'Gala Galaxy' by amendment of the resistance gene FB_MR5, resulting in the line C44.4146. To verify whether cisgenesis changed other tree-, flower...

2022-12-19 | MTBLS5810 | MetaboLights
TranscriptomicsApple russeting as seen through the RNA-seq lens: strong alterations in the exocarp cell wall
Russeting is a commercially important defect in apple (Malus x domestica) fruit production. Apple russeting is mainly characterized by the accumulation of suberin on the inner part of the cell wall. However, knowledge on the underlying genetic components triggering this trait remains sketchy. A bulk...
ORGANISM(S): Malus domestica 
2015-02-01 | E-GEOD-61040 | biostudies-arrayexpress
ProteomicsAn Integrated Transcriptome and Proteome Analysis Reveals New Insights of Fruit Russeting Formation in ‘Golden Delicious’ Apple
Russeting of apple fruit is a non-invasive physiological disorder. It occurs mainly in 'Golden Delicious' apple and its hybrids, while understanding of its molecular mechanism is still limited. In this study, we used mRNA sequencing and an isobaric tag for relative and absolute quantitation-based qu...
ORGANISM(S): Rosaceae 
2019-09-26 | PXD014960 | Pride
Fruit russeting formation  transcriptome  proteome  ‘golden delicious’ apple  lignin biosynthesis 
TranscriptomicsTranscriptome profiling of cultivar-specific apple fruit ripening and texture attributes
Molecular events regulating apple fruit ripening and sensory quality are largely unknown. Such knowledge is essential for genomic-assisted apple breeding and postharvest quality management. In this study, a parallel transcriptome profile analysis, scanning electron microscopic (SEM) examination and...
ORGANISM(S): Malus x domestica 
2010-11-05 | E-GEOD-24523 | biostudies-arrayexpress
ProteomicsIntegrative analysis of two russeted and non-russeted closely related apple varieties during fruit development provides new insights about the cuticle/suberin interplay
Apple russeting is characterized by the deposition of suberin in the inner part of the epidermal cell walls. It develops at the fruit surface when the integrity of the cuticle has been lost. Cutin and wax composition (including triterpene profile) is also affected in russeted skin. In the present w...
ORGANISM(S): Malus domestica 
2022-02-22 | PXD022712 | Pride
Metabolomics Integrative analysis : russeting Conjugated triterpene Lc-ms/ms Suberin Apple skin. 
TranscriptomicsTranscriptomic profiling reveals Neofabraea vagabunda infection-induced changes in susceptible and resistant apples during storage
Bull’s eye rot is one of the most severe diseases that may affect apples during storage. It is caused by the fungus Neofabraea vagabunda, and the mechanism by which the pathogen infects the fruits is only partially understood. In particular, very little is known about the molecular mechanisms regula...
ORGANISM(S): Malus domestica 
2024-03-06 | E-MTAB-13465 | biostudies-arrayexpress
MetabolomicsA benchmark spike-in data set for biomarker identification in metabolomics
The development and the validation of innovative approaches for biomarker selection are of paramount importance in many -omics technologies. Unfortunately, the actual testing of new methods on real data is difficult, because in real data sets, one can never be sure about the “true” biomarkers. In th...
2013-10-24 | MTBLS59 | MetaboLights
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