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MetabolomicsMulti-omics analysis revealed the aromatic compound metabolism in marine Roseobacter clade

Here, we selected Roseovarius nubinhibens as the model organism to comprehensively interrogate aromatic compound metabolism in marine Roseobacter clade. First, we preliminarily elucidated the three distinct mechanisms of aromatic compound transmembrane transport in R. nubinhibens. By integrating ...

2025-08-09 | MTBLS12306 | MetaboLights
MetabolomicsNew insights into the responses of soil microorganisms to polycyclic aromatic hydrocarbon stress by combining enzyme activity and sequencing analysis with metabolomics
Polycyclic aromatic hydrocarbons (PAHs), some of the most widespread organic contaminants, are highly toxic to soil microorganisms. Whether long-term polluted soils can still respond to the fresh input of pollutants is unknown. In this study, the soil enzyme activity, soil microbial community struct...
2021-02-17 | MTBLS1196 | MetaboLights
MetabolomicsRegulatory mechanisms for aromatic carbon metabolism in Comamonas testosteroni
Widely reported discrepancies between metabolic flux and transcripts or enzyme levels in bacterial metabolism imply complex regulation mechanisms need to be considered, especially in new bacterial platforms for bioremediation and bioproduction. Comamonas testosteroni strains, which metabolize variou...
2022-11-21 | MTBLS3947 | MetaboLights
MetabolomicsAromatic amino acids metabolism shapes autophagy mediated adaptation to iron deprivation in glioma

GBM displays profound iron dependence and metabolic plasticity, yet how iron deprivation interfaces with stress-response pathways and amino acid metabolism in glioma remains incompletely understood. DFO, an iron chelator and hypoxia mimetic, is widely used experimentally, but the integration of a...

2026-08-20 | MTBLS15394 | MetaboLights
MetabolomicsProfiling aromatic amino acid metabolome in the human gut microbiota reveals Clostridioides difficile specific N-acyl amino acids

Owing to its compositional and chemical complexity, much of the gut microbiota metabolome remains poorly characterized. Aromatic amino acids (AAAs) have a history of being privileged substrates for the biosynthesis of diverse bioactive metabolites and thus represent a potentially rich source of b...

2026-07-23 | MTBLS13404 | MetaboLights
ProteomicsC. testosteroni aromatic compound metabolism
Data comparing protein expression during growth of Comamonas testosteroni Kf1 on succinate with growth on 3 aromatic substrates (vanillate, terephthalate, 4-hydroxybenzoate). Quantification by diDO-IPTL (Waldbauer et al. 2017 Analytical Chemistry).
ORGANISM(S): Comamonas Testosteroni Kf-1 (ncbitaxon:399795) 
2021-11-19 | MSV000088418 | MassIVE
ProteomicsProteomic characterization of the Pseudomonas sp. strain phDV1 response to monocyclic aromatic compounds
The degradation of aromatic compounds comprises an important step in the removal of pollutants and re-utilization of plastics and other non-biological polymers. Here we set out to study Pseudomonas sp. strain phDV1, a gram-negative bacterium that was selected for its ability to degrade aromatic comp...
ORGANISM(S): Pseudomonas sp. phDV1 
2020-10-22 | PXD021237 | Pride
Phenol Cresol Aromatic degradation Pseudomonas 
MetabolomicsMulti-omics analysis reveals microbiota-metabolite crosstalk in MASLD pathogenesis in a non-obese murine model

The rising global prevalence of metabolic dysfunction-associated steatotic liver disease (MASLD), including its severe form metabolic dysfunction-associated steatohepatitis (MASH), underscores the urgency to elucidate its pathophysiology. To investigate key metabolic interactions central to MASLD...

2026-03-13 | MTBLS14048 | MetaboLights
ProteomicsMetabolic characterization of two white-rot fungi in diverse cultivation environments reveals biotechnologically relevant biosynthetic pathways
Two white-rot fungi, Trametes versicolor and Gelatoporia subvermispora, were cultivated in different environments - agitation and static incubation modes and variations in the level of antioxidants - during the conversion of a lignin-related aromatic compound and cellobiose. Both incubation mode and...
ORGANISM(S): Gelatoporia Subvermispora (ncbitaxon:42742) Trametes Versicolor (ncbitaxon:5325) 
2024-08-05 | MSV000095519 | MassIVE
no omics definedTranscription profiling of Aedes aegypti 4th stage-larvae to various xenobiotics, including insecticides, polycyclic aromatic hydrocarbons, herbicides and heavy metals
This microarray experiment aimed at studying the response of Aedes aegypti 4th stage-larvae to various xenobiotics, including insecticides, polycyclic aromatic hydrocarbons, herbicides and heavy metals.
ORGANISM(S): Aedes aegypti 
2008-12-31 | E-TABM-353 | biostudies-arrayexpress
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