Austin K K - OmicsDI

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Unknown (4166)
Transcriptomics (795)
Proteomics (68)
Genomics (40)
Metabolomics (11)
Models (1)
Genomic (1)

Organisms

Homo sapiens (310)
Mus musculus (179)
Thermus thermophilus HB8 (71)
Rattus norvegicus (47)
Arabidopsis thaliana (24)
Streptomyces coelicolor (19)
Bos taurus (16)
Sus scrofa (11)
Saccharomyces cerevisiae (11)
Drosophila melanogaster (11)
Oncorhynchus mykiss (8)
Escherichia coli (7)
Porphyromonas gingivalis (6)
Mycobacterium tuberculosis (6)
Populus trichocarpa x Populus deltoides (5)
Gallus gallus (5)
Staphylococcus aureus (4)
Escherichia coli K-12 (4)
Danio rerio (4)
Streptococcus mutans (3)
Brassica napus (3)
Listeria monocytogenes (3)
Aplysia californica (2)
Mustela putorius furo (2)
Leishmania donovani (2)
Clostridium botulinum (2)
Macaca mulatta (2)
Listeria monocytogenes EGD-e (2)
Fundulus heteroclitus (2)
Chlorocebus sabaeus (2)

Organisms

Homo sapiens (4)
Escherichia coli str. K-12 substr. W3110 (2)
Escherichia coli K-12 (2)
Clostridium taeniosporum (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Oryctolagus cuniculus (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (813)
pride (52)
ENA (16)
MassIVE (12)
MetaboLights (10)
EGA (8)
jPOST (3)
BioModels (1)
dbGaP (1)
geo (1)
GNPS (1)
PanoramaPublic (1)

Tissue

Cell culture (12)
Leaf (6)
Embryonic stem cell (3)
Animal cap (2)
Blood (2)
Blood cell (2)
Early embryonic cell (2)
Embryo (2)
Flower bud (2)
Germ (2)
Nucleus (2)
Permanent cell line cell (2)
Whole body (2)
Brain (1)
Endosperm (1)
Islet of Langerhans (1)
Muscle cell (1)
Pancreatic islet (1)
Plantlet (1)
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Seed (1)
Shoot (1)
Skeletal muscle (1)
Sprout (1)
Squamous cell of epidermis (1)
Squamous epithelial cell (1)
Type B pancreatic cell (1)

Disease

Normal (8)
Acute leukemia (2)
Hypertension (1)
Chronic granulomatous disease (1)
Basal cell carcinoma, Gorlin-Goltz syndrome (1)
IRAK-4 Q293X mutation (1)
Infant SGA (1)
Renal cell carcinoma (1)
Glioblastoma (1)
Colorectal adenocarcinoma (1)
Lung squamous cell carcinoma (1)
Prostate carcinoma (1)
Breast cancer (1)
Disease free (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (52)
Shotgun proteomics (31)
Bottom-up proteomics (14)
Mass spectrometry (8)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (4)
Illumina Genome Analyzer IIx (3)
LTQ Orbitrap (3)
Orbitrap Fusion Lumos (3)
Illumina Genome Analyzer (2)
ScanArray Express HT [PerkinElmer] (2)
Illumina Genome Analyzer II (2)
NextSeq 500 (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion (2)
HP desktop (1)
Fluidics workstation (1)
Nanodrop N1000 spectrophotometer (1)
ScanArray [PerkinElmer] (1)
GeneChip Scanner 3000 [Affymetrix] (1)
GenePix 4000A [Axon Instruments] (1)
G2505A DNA microarray scanner [Agilent] (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
Ion Torrent PGM (1)
NextSeq 2000 (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Thermo Fisher Scientific (MA, USA) Q Exactive hybrid quadrupole-orbitrap mass spectrometer (1)
Thermo Fisher Scientific (MA, USA) Vanquish Horizon Duo ultra-high performance liquid chromatography (UHPLC) system with an Accucore C18 column with 150 mm length, 2.1 mm internal diameter, and 2.6 µm particle size (1)
LTQ Orbitrap Elite (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)

Publication Date

2010 (189)
2011 (101)
2012 (92)
2013 (86)
2014 (82)
2015 (65)
2008 (63)
2009 (50)
2016 (33)
2019 (27)
2007 (23)
2023 (11)
2024 (10)
2022 (10)
2026 (9)
2025 (7)
2020 (7)
2021 (6)
2017 (6)
2005 (6)
2006 (4)
2004 (3)
2018 (2)
2003 (1)

CHEBI ID

CHEBI:15741 (4)
CHEBI:18012 (4)
CHEBI:6650 (4)
CHEBI:15428 (3)
CHEBI:15756 (3)
CHEBI:16113 (3)
CHEBI:16414 (3)
CHEBI:16737 (3)
CHEBI:16857 (3)
CHEBI:17822 (3)
CHEBI:18050 (3)
CHEBI:18186 (3)
CHEBI:18237 (3)
CHEBI:26271 (3)
CHEBI:28044 (3)
CHEBI:28822 (3)
CHEBI:28842 (3)
CHEBI:30769 (3)
CHEBI:30805 (3)
CHEBI:30830 (3)
CHEBI:75455 (3)
CHEBI:1148 (2)
CHEBI:15603 (2)
CHEBI:15843 (2)
CHEBI:15903 (2)
CHEBI:15908 (2)
CHEBI:16000 (2)
CHEBI:16010 (2)
CHEBI:16196 (2)
CHEBI:16199 (2)

Metabolite Name

L-Proline (4)
L-Valine (4)
2-Hydroxybutyric acid (3)
Cholesterol (3)
Glycine (3)
Heptanoic acid (3)
Itaconic acid (3)
L-Threonine (3)
Pyroglutamic acid (3)
Tyrosine (3)
(+)-2-Amino-7-phosphonoheptanoic acid (2)
(+)-7-epi-Syringaresinol 4'-glucoside (2)
(+-)-(4Ar*,10R*,10aS*)-8-Chloro-1,2,3,4,10,10a-hexahydro-2-methyl-4a,10-(iminoethano)-4aH-(1)benzopyrano(3,2-c)pyridin-12-one (2)
(-)-Mintlactone (2)
(1Ar,2Z,4E,14R,15aR)-8-chloro-9,11-dihydroxy-14-methyl-15,15a-dihydro-1aH-benzo[c]oxireno[2,3-k][1]oxacyclotetradecine-6,12(7H,14H)-dione (2)
(2-Amino-2-oxoethyl)phosphinous acid (2)
(2-Methylphenyl) Dihydrogen Phosphate (2)
(2R)-3-(4-Cyanophenoxy)-N-[4-cyano-3-(trifluoromethyl)phenyl]-2-hydroxy-2-methylpropanamide (2)
(2R,4S)-2-Aminoformyl-6-fluoro-spiro[chroman-4,4'-imidazolidine]-2',5'-dione (2)
(2S)-2-Amino-3-[4-[(2S)-2-amino-3-(4-hydroxyphenyl)propanoyl]oxy-3-chlorophenyl]propanoic acid (2)
(2S)-2-[(2-Carboxy-2-oxoethyl)amino]pentanedioic acid (2)
(2S,3S,4S,5R)-3,4,5-Trihydroxy-6-[5-hydroxy-3-(4-hydroxyphenyl)-4-oxochromen-7-yl]oxyoxane-2-carboxylic acid (2)
(4-Amino-2-methylpyrimidin-5-YL)methyl dihydrogen phosphate (2)
(4-Hydroxy-3-iodo-5-nitrophenyl)acetic acid (2)
(5S,6R)-Methyl 5,6,7-trihydroxyheptanoate (2)
(6-Aminoquinolin-2-yl) N-(2,5-dihydroxypyrrol-1-yl)-N-hydroxycarbamate (2)
(6R)-5,10-methenyltetrahydrofolate (2)
(9R)-7-[[3,5-Bis(trifluoromethyl)phenyl]methyl]-9-methyl-5-(4-methylphenyl)-8,9,10,11-tetrahydro-[1,4]diazocino[2,1-g][1,7]naphthyridine-6,13-dione (2)
(9S,10S)-9,10-dihydroxyoctadecanoate (2)
(D-Pen2,D-Pen5)-Enkephalin (2)

First Public Date

2018 (4)
2014 (4)
2016 (3)
2024 (2)
2022 (1)
2021 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA (11)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (10)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA (9)
Molecular Biosciences and the Center for Systems and Synthetic Biology, the University of Texas at Austin, Austin, TX, USA (2)
1Department of Chemistry, University of Texas at Austin, Austin, TX, 78712, USA (1)
Associate Professor Stephen F. and Fay Evans Martin Endowed Professorship in Chemistry CPRIT Scholar Department of Chemistry University of Texas at Austin (1)
Associate Professor; Director of the Molecular and Applied Sciences Laboratory and Applied Physiology Laboratory (1)
Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK. (1)
Corresponding author of research, responsible for contracting Mass Spec services at CeMM (1)
Corresponding author on the publication and contracted services for MS analysis at CeMM. (1)
Department of Chemistry, University of Texas at Austin, Austin (1)
Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712 (1)
Department of Pediatrics, Indiana University School of Medicine, Indianapolis, IN, United States (1)
Dr. Gerhard Mittler Group Leader Proteomics Unit MPI Immunobiology and Epigenetics Stuebeweg 51 D-79108 Freiburg, Germany Phone: +49 (0)761 5108 712 (1)
IMBB-FORTH /AUTH (1)
ISSCOR / UCSD (1)
MRC-Laboratory of Medical Sciences (1)
Molecular Biosciences and Center for Systems and Synthetic Biology, University of Texas at Austin, USA (1)
Molecular Biosciences and the Center for Systems and Synthetic Biology, the University of Texas at Austin, Austin, TX USA (1)
Molecular Biosciences, University of Texas at Austin, USA (1)
Molecular Biosciences, and the Center for Systems and Synthetic Biology, University of Texas at Austin, Austin, TX USA (1)
Reader | Centre for Genomics and Computational Biology Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ Tel: +44 (0)20 7882 8266 (1)
The University of Texas at Austin (1)
University of Texas at Austin (1)

IsPrivate

False (1)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (6)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (677)
RNA-seq of coding RNA (32)
RNA-seq of non coding RNA (22)
Comparative genomic hybridization by array (16)
Other (14)
ChIP-seq (12)
Unknown experiment type (11)
ChIP-chip by array (3)
Transcription profiling by RT-PCR (3)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (3)
Transcription profiling by tiling array (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
CLIP-seq (1)
MicroRNA profiling by high throughput sequencing (1)
Ribo-seq (1)
DNA-seq (1)
CUT&RUN (1)
RNA-seq of total RNA (1)

Release Date

2022 (483)
2025 (476)
2023 (451)
2021 (427)
2024 (426)
2020 (303)
2019 (245)
2010 (241)
2014 (231)
2018 (224)
2015 (220)
2016 (194)
2011 (181)
2013 (179)
2017 (171)
2012 (161)
2008 (100)
2009 (91)
2026 (84)
2007 (40)
2006 (17)
2005 (12)
2004 (8)
2001 (5)
2003 (4)
2000 (2)
2002 (1)
1999 (1)
1998 (1)

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Mutant K-ras promotes carcinogen-induced murine colorectal tumourigenesis, but does not alter tumour chromosome stability

K-ras mutations are observed in around 40% human colorectal adenomas and carcinomas and contribute to the pathogenesis of human and rodent colorectal tumour formation. Previously, we developed and characterised a strain of transgenic mice with inducible intestinal epithelial expression of K-rasVal12...

ORGANISM(S): Mus musculus

2010-10-02 | E-GEOD-24010 | biostudies-arrayexpress

cDNA microarray analysis of splenic B220+CD138+ plasma cells from K/BxNsf and K/BxN mice

Long-lived plasma cells (LLPCs) develop under the help of follicular helper T (Tfh) cells and reside mainly in the bone marrow. However, these cells are unusually abundant in the spleen of several autoimmune models including K/BxNsf mice, yet their pathogenic impact remains unknown. To investigate a...

ORGANISM(S): Mus musculus

2016-03-01 | E-GEOD-66947 | biostudies-arrayexpress

A genome-wide transcriptome analysis reveals diverse roles of two-component system DraR-K in physiological and morphological differentiation of Streptomyces coelicolor

A novel two-component system (TCS) DraR-K was identified previously to play a differential role in antibiotic biosynthesis (ACT, RED and yCPK) of Streptomyces coelicolor M145 on defined minimal medium (MM) conditions. In order to assess whether DraR-K has more global roles, a genome-wide transcripto...

ORGANISM(S): Streptomyces coelicolor

2014-03-10 | E-GEOD-55714 | biostudies-arrayexpress

KmerCrypt: private k-mer search with homomorphic encryption.

Not available

S-EPMC12684705 | biostudies-literature

Clostridium taeniosporum strain:1/k

Clostridium taeniosporum strain:1/k Genome sequencing and assembly

PRJNA339855 | ENA

Gene expression profiling of metastatic lung cancer cell lines

During malignant disease progression, the extracellular matrix (ECM) of epithelial tumors accumulates inter-molecular cross-links between collagen strands; these cross-links enhance ECM stiffness and trigger tumor cell invasion and dissemination, but the mechanisms that regulate intra-tumoral collag...

ORGANISM(S): Mus musculus

2015-03-12 | E-GEOD-49315 | biostudies-arrayexpress

Escherichia coli K-12 strain:K12

Escherichia coli K-12 strain:K12 Genome sequencing and assembly

PRJNA386309 | ENA

Conductance stability and Na+ interaction with Shab K+ channels under low K+ conditions.

Not available

S-EPMC8555546 | biostudies-literature

Escherichia coli K-12

A high-throughput search for intracellular factors that affect RNA folding identifies the E. coli proteins PepA and YagL as RNA chaperones that promote RNA remodeling

PRJNA923723 | ENA

Proteomic analyses of native brain K(V)4.2 channel complexes.

Not available

S-EPMC2826169 | biostudies-literature

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