Avian - OmicsDI

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Unknown (12999)
Transcriptomics (4302)
Genomics (1669)
Proteomics (169)
Metabolomics (28)
Other (17)
Models (4)
Methylation profiling (4)
Clinical (1)

Organisms

Homo sapiens (1634)
Mus musculus (1100)
Gallus gallus (459)
Arabidopsis thaliana (122)
Rattus norvegicus (122)
Drosophila melanogaster (67)
Saccharomyces cerevisiae (60)
Sus scrofa (51)
Bos taurus (46)
Danio rerio (42)
Taeniopygia guttata (32)
Escherichia coli (30)
Coturnix japonica (25)
Caenorhabditis elegans (24)
Macaca mulatta (23)
Meleagris gallopavo (22)
Oryza sativa (21)
Canis lupus familiaris (21)
Zea mays (18)
Streptococcus pneumoniae D39 (16)
Colinus virginianus (16)
Oncorhynchus mykiss (15)
Oryza sativa Japonica Group (12)
Schizosaccharomyces pombe (10)
Staphylococcus aureus (10)
Medicago truncatula (9)
Ovis aries (9)
Xenopus laevis (7)
Aves (4)
H5N6 subtype (2)

Organisms

Gallus gallus (233)
Escherichia coli (55)
Influenza A virus (45)
Homo sapiens (45)
Mus musculus (39)
Taeniopygia guttata (15)
Meleagris gallopavo (14)
Coturnix japonica (11)
avian paramyxovirus 1 (9)
Colinus virginianus (9)
Bos taurus (8)
Avian coronavirus (5)
Mycoplasmoides gallisepticum (5)
Canis lupus familiaris (5)
Avian orthoreovirus (4)
unidentified influenza virus (4)
Chlamydia psittaci (4)
Campylobacter jejuni (4)
Aves (4)
Mustela putorius furo (4)
unidentified (4)
Columba livia (4)
Anas platyrhynchos (4)
gut metagenome (4)
Influenza B virus (3)
Salmonella enterica subsp. enterica serovar Enteritidis (3)
Sterna hirundo (3)
Leptosomus discolor (3)
Tyto alba (3)
Macaca fascicularis (3)

Repository

biostudies-arrayexpress (4086)
ENA (1502)
geo (397)
pride (74)
MassIVE (37)
MetaboLights (27)
iProX (21)
EGA (14)
jPOST (12)
PAXDB (6)
EVA (5)
BioModels (4)
PanoramaPublic (3)
ExpressionAtlas (2)
GPMDB (2)
GNPS (1)

Tissue

Epithelial cell (13)
Lung (11)
Cell culture (7)
Blood plasma (5)
Inner ear (4)
Macular hair cell (4)
Utricle (4)
B cell (3)
Blood cell (3)
Eggshell (3)
Ileum (2)
Bone (2)
Egg (2)
Liver (2)
Monocyte (2)
Primary cell (2)
Sperm (2)
Spermatozoon (2)
Blood serum (1)
Bone marrow (1)
Brain (1)
Breast (1)
Bursa of Fabricius (1)
Calu-3 cell (1)
Cerebrospinal fluid (1)
Colon (1)
Embryo (1)
Epithelial cell of alveolus of lung (1)
Epithelial cell of lung (1)
Feather (1)

Disease

Normal (6)
Breast cancer (3)
Adenocarcinoma (2)
H9N2 infected (2)
Glioblastoma (2)
Testicular seminoma (1)
CLL (1)
Arrhythmias and right ventricular dysfunction (1)
GIP-dependent Cushing's syndrome (1)
HPV positive (1)
HIV encephalitis (1)
Osteosarcoma subtype fibroblastic (1)
High grade glioblastoma (1)
Cocaine addiction (1)
Primary effusion lymphoma (PEL) (1)
DNA damage (1)
K173 influenza (1)
Extranodal NK/T-Cell Lymphoma derived cell line (1)
Uninfected (1)
Infected with IBDV strain F52/70 (1)
Schizophrenia (1)
Mock infected (1)
Infected (1)
IBDV infected (1)
Leukemia (1)
UV inactivated HSV-1 infected (1)
Eimeria maxima infected (1)
Renal cell carcinoma (1)
Melanoma (1)
Chicken Anaemia Virus infected (1)

Technology Type

Mass Spectrometry (74)
Shotgun proteomics (35)
Mass spectrometry (22)
Bottom-up proteomics (19)
Gel-based experiment (9)
Data-dependent acquisition (5)
Data-independent acquisition (5)
Mass spectrometry assay (4)
Affinity purification coupled with mass spectrometry proteomics (3)
SWATH MS (2)
Top-down proteomics (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Immunopeptidomics (1)
MSE (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2500 (30)
Illumina NovaSeq 6000 (25)
NextSeq 500 (13)
Illumina HiSeq 2000 (12)
Illumina HiSeq 4000 (7)
Illumina Genome Analyzer IIx (5)
NextSeq 550 (5)
Illumina HiSeq 3000 (4)
Illumina MiSeq (4)
ScanArray 5000 [PerkinElmer] (3)
Illumina Genome Analyzer II (3)
NextSeq 2000 (3)
GeneChip Scanner 3000 [Affymetrix] (2)
DNA Microarray Scanner BA [Agilent Technologies] (2)
418 [Affymetrix] (2)
GenePix 4000B [Axon Instruments] (2)
R (2)
DNBSEQ-G400 (2)
Dell Precision Tower 7910 workstation (1)
Affymetrix GCS3000 7G SCANNER (1)
GeneChip Hybridization Oveer 640 (1)
Bio-Rad T100 Thermocycler (1)
DNBSEQ Devices (1)
TriFast (VWR, 30-2010), RNeasy Mini Kit (Qiagen, 74104), DNAse 1 (NEB, M0303); Agilent 2100 Bioanalyzer (1)
HEK-293T cells, Media, PEI, Illumination device (1)
Linux (1)
TruSeq stranded Total RNA kit (Illumina) (1)
The RNeasy mini kit (Qiagen) (1)
Diva (1)
Agilent 2100 Bioanalyzer, Applied Biosystems 7900HT Sequence Detection System, Illumina TruSeq Small RNA Sample Preparation Kit (1)

Publication Date

2015 (727)
2010 (650)
2013 (573)
2014 (468)
2012 (468)
2011 (449)
2008 (220)
2016 (206)
2009 (188)
2007 (105)
2025 (99)
2022 (72)
2026 (52)
2019 (50)
2024 (49)
2020 (46)
2018 (46)
2021 (40)
2017 (36)
2023 (33)
2006 (32)
2005 (25)
2004 (12)
2003 (6)
2002 (2)

UNIPROT ID/AC

10090.ENSMUSP00000078339 (2)
10090.ENSMUSP00000079727 (2)
10116.ENSRNOP00000008094 (2)
10116.ENSRNOP00000038745 (2)
10116.ENSRNOP00000046711 (2)
10116.ENSRNOP00000054601 (2)
10116.ENSRNOP00000059382 (2)
10116.ENSRNOP00000060273 (2)
10116.ENSRNOP00000066778 (2)
10116.ENSRNOP00000067409 (2)
1433S_MOUSE (2)
2ABA_MOUSE (2)
3HIDH_MOUSE (2)
41_CHICK (2)
9031.ENSGALP00000001352 (2)
9031.ENSGALP00000005115 (2)
9031.ENSGALP00000005340 (2)
9031.ENSGALP00000005497 (2)
9031.ENSGALP00000006909 (2)
9031.ENSGALP00000007662 (2)
9031.ENSGALP00000007667 (2)
9031.ENSGALP00000008279 (2)
9031.ENSGALP00000021815 (2)
9031.ENSGALP00000026707 (2)
9031.ENSGALP00000027141 (2)
9031.ENSGALP00000039755 (2)
9031.ENSGALP00000040189 (2)
9031.ENSGALP00000041846 (2)
9031.ENSGALP00000042511 (2)
9031.ENSGALP00000043018 (2)

CHEBI ID

CHEBI:17368 (6)
CHEBI:34494 (5)
CHEBI:16467 (5)
CHEBI:28158 (5)
CHEBI:72663 (5)
CHEBI:15891 (5)
CHEBI:17568 (5)
CHEBI:16919 (5)
CHEBI:72643 (4)
CHEBI:15547 (4)
CHEBI:19138 (4)
CHEBI:28621 (4)
CHEBI:83359 (4)
CHEBI:83358 (4)
CHEBI:16566 (4)
CHEBI:16040 (4)
CHEBI:72665 (4)
CHEBI:80774 (4)
CHEBI:15647 (4)
CHEBI:67042 (4)
CHEBI:22470 (4)
CHEBI:53487 (4)
CHEBI:15843 (4)
CHEBI:48131 (4)
CHEBI:28852 (4)
CHEBI:72605 (4)
CHEBI:17750 (4)
CHEBI:16704 (4)
CHEBI:16750 (4)
CHEBI:16414 (4)

Metabolite Name

Hypoxanthine (10)
Betaine (7)
Cytosine (7)
Adenosine (7)
Triethanolamine (6)
Choline (6)
Cytidine (6)
Sphinganine (5)
Guanine (5)
2-Methylbutyroylcarnitine (5)
Taurine (5)
Oleamide (5)
L-Histidine (5)
Adenine (5)
Uracil (5)
Daidzein (5)
Stearamide (5)
Glycerophosphocholine (5)
Inosine (5)
Val-Lys (4)
Stearoylcarnitine (4)
PC(16:0/16:0) (4)
Urocanic acid (4)
Diethanolamine (4)
SM(d18:1/20:0) (4)
Primaquine (4)
Pirimicarb (4)
Cer(d18:0/16:0) (4)
Phytosphingosine (4)
Ornithine (4)

First Public Date

2025 (202)
2026 (196)
2024 (182)
2014 (140)
2022 (110)
2023 (104)
2019 (101)
2020 (88)
2021 (84)
2018 (75)
2013 (64)
2017 (61)
2016 (47)
2015 (44)
2012 (3)
2011 (1)

Modelling Approach

Ordinary differential equation model (4)

Study status

Active, not recruiting (1)

Lab affiliation

Oregon Hearing Research Center Oregon Health & Science University Portland, OR, USA (4)
Cancer Research UK Cambridge Institute, University of Cambridge (3)
Institute of Animal Reproduction and Food Research of Polish Academy of Sciences (2)
3 Univ. Grenoble Alpes, CNRS, INRAE, CEA, IRIG-LPCV, 38000 Grenoble, FranceLPCV - to be completed 4. Univ. Grenoble Alpes, CEA, INSERM, UA13 BGE, CNRS, CEA, FR2048, Grenoble, France (1)
Aarhus University, Denmark (1)
Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, College of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, PR China (1)
BS&MS (1)
Beijing Key Laboratory for Prevention and Control of Infectious Diseases in Livestock and Poultry, Institute of Animal Husbandry and Veterinary Medicine, Beijing Academy of Agriculture and Forestry Sciences (1)
Biomolecular Mass Spectrometry & Proteomics, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, the Netherlands. (1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (1)
Chemistry and Biomolecular Sciences, Macquarie University, North Ryde (1)
College of Veterinary Medicine, South China Agricultural University, Guangzhou, China (1)
Core Facility Proteomics, Department of Clinical Medicine, University Medical Center Goettingen, Germany (1)
DTU Bioengineering (1)
Department of Archaeology and Anthropology, School of Humanities, University of Chinese Academy of Sciences, Beijing, China (1)
Department of Archaeology and Anthropology, University of Chinese Academy of Sciences (1)
Department of Biochemistry and Biophysics, University of California San Franscisco, San Francisco, CA, USA; Howard Hughes Medical Institute (1)
Department of Life Sciences and Systems Biology, University of Turin (1)
Department of Life Sciences and Systems Biology, University of Turin (Italy) (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)
Department of clinical Biochemistry, Copenhagen University Hospital, Bispebjerg and Frederiksberg Hospital, Denmark (1)
Dept of Pathology, Dalhousie University (1)
Dept. Cellular Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Dept. Cellular Molecular Pharmacology, University of San Francisco (UCSF), USA (1)
Dept. Cellular and Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Division of Animal Evolutionary Biology, Department of Zoology Faculty of Science, Charles University in Prague Viničná 7, 128 44 Praha, Czech Republic (1)
Equipe "Fonction et regulation des proteines de l'oeuf" INRA UR83 Recherches avicoles F-37380 Nouzilly (1)
Equipe Fonction et Régulation des Protéines de l'Oeuf (FRPO) UR83 Recherches Avicoles INRA Val de Loire 37380 NOUZILLY (1)
Equipe Interactions Cellulaires et Fertilité INRA Centre Val de Loire UMR de Physiologie de la Reproduction et des Comportements (1)
Faculty of Natural Sciences, Keele University, UK (1)

Keyword

Vincristine (1)
Prednisone (1)
Doxorubicin (1)
Liposomal doxorubicin (1)
Rituximab (1)
Lenalidomide (1)
Cyclophosphamide (1)
Etoposide (1)
Etoposide phosphate (1)

IsPrivate

False (4)

Classification

bacteria (113)
viruses (87)
protozoa (3)
fungi (2)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (2927)
RNA-seq of coding RNA (515)
Unknown experiment type (132)
RNA-seq of non coding RNA (98)
ChIP-seq (78)
Comparative genomic hybridization by array (51)
Other (47)
ChIP-chip by tiling array (40)
Methylation profiling by array (39)
Transcription profiling by SAGE (37)
Transcription profiling by RT-PCR (18)
Transcription profiling by tiling array (17)
Proteomic profiling by array (17)
Methylation profiling by high throughput sequencing (13)
Genotyping by array (7)
Animal - High-throughput sequencing (6)
ChIP-chip by array (5)
RNA-seq of coding RNA from single cells (5)
High-throughput sequencing (4)
MicroRNA profiling by high throughput sequencing (4)
RNA-seq of total RNA (4)
RNAi profiling by array (3)
DNA-seq (3)
MicroRNA profiling by array (2)
ChIP-chip by SNP array (1)
Transcription profiling by MPSS (1)
GRO-seq (1)
Differential (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)

Release Date

2015 (1365)
2022 (1183)
2025 (1167)
2023 (1065)
2021 (1019)
2020 (1018)
2014 (997)
2013 (982)
2024 (942)
2010 (889)
2019 (869)
2012 (809)
2016 (801)
2018 (797)
2011 (758)
2017 (743)
2009 (393)
2008 (379)
2007 (234)
2026 (168)
2006 (130)
2005 (105)
2004 (57)
2000 (46)
2003 (42)
2002 (33)
1999 (33)
2001 (29)
1998 (20)
1997 (8)

Location

United States (1)

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Quantitative Metabolomic Dataset of Avian Eye Lenses

Metabolomics is a powerful set of methods that uses analytical techniques to identify and quantify metabolites in biological samples, providing a snapshot of the metabolic state of a biological system. In medicine, metabolomics can help diagnose diseases, reveal molecular basis of a disease, and ...

2023-06-30 | MTBLS7739 | MetaboLights

Identification of avian RIG-I responsive genes during influenza infection

Transcriptional profiling of chicken embryonic fibroblasts (DF-1 cells) comparing the effects of chicken cells transfected with duck RIG-I compared to empty-vector transfected cells following with low or highly pathogenic avian influenza. Goal was to determine the effects of duck RIG-I on influenza-...

ORGANISM(S): Gallus gallus

2012-12-12 | E-GEOD-29596 | biostudies-arrayexpress

Molecular immunophenotyping of lungs and spleens in naive and vaccinated chickens early after pulmonary avian influenza A (H9N2) virus infection

In a respiratory-infection-model with the avian influenza A H9N2 virus, lung and splenic immune reactions in chickens were studied using a 5K chicken immuno-microarray. Groups of chickens were either mock-immunized (referred to as non-immune), vaccinated with inactivated viral antigen only (immune) ...

ORGANISM(S): Gallus gallus

2015-11-02 | E-MTAB-3999 | biostudies-arrayexpress

Transcription profiling of chicken trachea to investigate responses to avian influenza virus

ORGANISM(S): Gallus gallus

2009-07-31 | E-TABM-637 | biostudies-arrayexpress

Transcription profiling of chicken lung to investigate responses to avian influenza virus

ORGANISM(S): Gallus gallus

2009-07-31 | E-TABM-636 | biostudies-arrayexpress

Liu2017 - Dynamics of Avian Influenza with Logistic Growth

Sanhong Liu, Shigui Ruan & Xinan Zhang. Nonlinear dynamics of avian influenza epidemic models. Mathematical Biosciences 283 (2017). Avian influenza is a zoonotic disease caused by the transmission of the avian influenza A virus, such as H5N1 and H7N9, from birds to humans. The avian influenza A H5N...

2024-09-02 | BIOMD0000000708 | BioModels

Liu2017 - Dynamics of Avian Influenza with Allee Growth Effect

2024-09-02 | BIOMD0000000709 | BioModels

avian paramyxovirus 1

Avian Avulavirus Genome sequencing

PRJNA889548 | ENA

Avian orthoreovirus

Avian orthoreovirus Genome sequencing and assembly

PRJNA1201219 | ENA

Quantitative proteomic analysis of duck lung tissue during infection of avian influenza

Ducks and wild aquatic birds are the natural reservoirs of avian influenza viruses. However, the host proteome response that causes disease in vivo during infection by the highly pathogenic avian influenza (HPAI) H5N1 virus is still not well understood. In the present study, we compared the proteome...

ORGANISM(S): Anas platyrhynchos

2022-08-22 | PXD002719 | Pride

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19193 Results

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