Bai D D - OmicsDI

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Unknown (5273)
Transcriptomics (111)
Proteomics (110)
Metabolomics (25)
Genomics (21)
Models (1)

Organisms

Homo sapiens (97)
Mus musculus (40)
Arabidopsis thaliana (17)
Rattus norvegicus (10)
Brassica rapa subsp. pekinensis (5)
Solanum lycopersicum (5)
Drosophila melanogaster (3)
Myzus persicae (2)
Glycine soja (2)
Oryza sativa (2)
Populus tremula x Populus alba (2)
Glycine max (2)
Oryza sativa Japonica Group (2)
Danio rerio (2)
Medicago truncatula (2)
Murinae (1)
Brassica rapa subsp. oleifera (1)
(Populus tomentosa x Populus bolleana) x Populus tomentosa (1)
Oryza rufipogon (1)
Populus alba (1)
Ipomoea batatas (1)
Brassica rapa subsp. chinensis (1)
Siniperca chuatsi (1)
Macaca mulatta (1)
soil metagenome (1)
Brassica rapa (1)
Brassica napus (1)
Staphylococcus epidermidis (1)
Populus trichocarpa (1)
Echinococcus granulosus (1)

Organisms

Paeonia ostii (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (119)
pride (61)
iProX (39)
MetaboLights (25)
MassIVE (8)
EGA (6)
ENA (5)
geo (2)
BioModels (1)
jPOST (1)
PeptideAtlas (1)

Tissue

Cell culture (16)
Brain (5)
Blood serum (4)
Lung (4)
Blood plasma (3)
Skin (3)
Cell suspension culture (2)
Epithelial cell (2)
Kidney (2)
Permanent cell line cell (2)
Seed (2)
Brain (1)
Adductor (1)
Blood cell (1)
Breast (1)
Cerebrospinal fluid secreting cell (1)
Cervix squamous epithelium (1)
Egg (1)
Embryonic fibroblast (1)
Embryonic stem cell (1)
Epithelial cell of lung (1)
Exoskeleton (1)
HeLa cell (1)
Heart (1)
Hepatocyte (1)
Keratinocyte (1)
Leaf (1)
Liver (1)
Liver cancer cell (1)
Melanocyte (1)

Disease

Disease free (3)
Breast cancer (2)
Liver cancer (2)
Severe acute respiratory syndrome (2)
Alzheimer's disease (1)
COVID-19 (1)
Cervix carcinoma (1)
Encephalopathy (1)
Hydrocephalus (1)
Lung cancer (1)
Mental depression (1)
Mixed disorder as reaction to stress (1)
Residual chronic schizophrenia (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (61)
Shotgun proteomics (22)
Mass spectrometry (20)
Bottom-up proteomics (19)
Data-dependent acquisition (11)
Gel-based experiment (6)
Mass spectrometry assay (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-independent acquisition (4)
Top-down proteomics (3)
Immunopeptidomics (2)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Mass spectrometry imaging (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (15)
Liquid Chromatography MS - positive - reverse phase (13)
Q Exactive (5)
Liquid Chromatography MS - negative - hilic (4)
Liquid Chromatography MS - positive - hilic (4)
Illumina HiSeq 2500 (3)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
HiSeq X Ten (2)
LTQ Orbitrap (2)
Agilent G2505B scanner (1)
Scanning hardware (1)
Illumina HiSeq X (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
6550 iFunnel Q-TOF LC/MS (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Q Exactive HF (1)
Direct infusion MS - negative (1)
Flow injection analysis MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2026 (27)
2014 (25)
2025 (25)
2013 (24)
2024 (22)
2021 (21)
2022 (20)
2015 (16)
2023 (16)
2012 (12)
2010 (11)
2016 (10)
2019 (6)
2020 (5)
2017 (5)
2008 (4)
2011 (3)
2006 (2)
2009 (1)
2007 (1)
2018 (1)

UNIPROT ID/AC

P13405 (1)
P25322 (1)
P97377 (1)
Q61457 (1)
Q61501 (1)
Q9JKW8 (1)
A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1S3 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0M8Q6 (1)
A0MZ66 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:15971 (10)
CHEBI:16335 (10)
CHEBI:17895 (10)
CHEBI:15843 (9)
CHEBI:16704 (9)
CHEBI:17203 (9)
CHEBI:55328 (9)
CHEBI:15824 (8)
CHEBI:16027 (8)
CHEBI:16235 (8)
CHEBI:16467 (8)
CHEBI:16919 (8)
CHEBI:17154 (8)
CHEBI:17351 (8)
CHEBI:17562 (8)
CHEBI:30769 (8)
CHEBI:7916 (8)
CHEBI:15741 (7)
CHEBI:15891 (7)
CHEBI:16015 (7)
CHEBI:16196 (7)
CHEBI:16347 (7)
CHEBI:16414 (7)
CHEBI:16543 (7)
CHEBI:16643 (7)
CHEBI:16708 (7)
CHEBI:17053 (7)
CHEBI:17368 (7)
CHEBI:17405 (7)
CHEBI:17568 (7)

Metabolite Name

Adenine (8)
Creatine (8)
Hypoxanthine (8)
Taurine (8)
Uracil (8)
Adenosine (7)
L-Arginine (7)
Thymine (7)
Betaine (6)
Cytidine (6)
Guanine (6)
Inosine (6)
Ketoleucine (6)
L-Carnitine (6)
L-Glutamine (6)
N-Acetylneuraminic acid (6)
Ornithine (6)
Pantothenic acid (6)
Phenylacetylglycine (6)
Thymidine (6)
Uric acid (6)
Uridine (6)
Xanthine (6)
Xanthosine (6)
AMP (5)
Acetylcholine (5)
Arachidonic acid (5)
Creatinine (5)
Cytosine (5)
Docosahexaenoic acid (5)

First Public Date

2026 (2)
2020 (1)
2015 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

XiangYa hospital of Central south university (3)
Center for Translational Medicine, The Affiliated Zhangjiagang Hospital of Soochow University, Suzhou Medical College of Soochow University (2)
Children's Hospital of Nanjing Medical University (2)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
1. State Key Laboratory of Genetic Evolution & Animal Models, Key Laboratory of Healthy Aging Research of Yunnan Province, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China 2. University of Chinese Academy of Sciences, Beijing 100101, China 3. KIZ/CUHK Joint Laboratory of Bioresources and Molecular Research in Common Diseases, Kunming 650201, China (1)
Academy of Orthopedics, Guangdong Province, Guangdong Provincial Key Laboratory of Bone and Joint Degeneration Diseases, The Third Affiliated Hospital of Southern Medical University, Guangzhou, Guangdong, China (1)
Bio-X Institutes, Key Laboratory for the Genetics of Development and Neuropsychiatric Disorders (Ministry of Education), Shanghai Key Laboratory of Psychotic Disorders, and Brain Science and Technology Research Center, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China. (1)
CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, Institute of High Energy Physics and National Center for Nanoscience and Technology of China, Chinese Academy of Sciences, Beijing 100049, P. R. China (1)
CNRS-IPHC-LSMBO (1)
Cell Biology Department, Harvard Medical School (1)
Children's Hospital of Soochow University, Suzhou (1)
Children's hospitall of Chongqing medical university China (1)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China (1)
Depart of Respiratory and Clinical Care Medicine, The Second Center & National Clinical Research Center for Geriatic Disease, Medical School of Chinese PLA, China. (1)
Department of Biochemistry and Molecular Genetics University of Virginia School of Medicine (1)
Department of Biology, Henan University, Kaifeng 475001, The Peoples Republic of China. (1)
Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Chemistry and Bioscience, Aalborg University, Denmark (1)
Department of General Surgery, Pancreatic Disease Center, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
Department of Microbiology, The University of Hong Kong, Hong Kong, SAR, China (1)
Department of Neurology, Emory University, Atlanta, GA 30322 (1)
Department of Neurosurgery and Institute for NeurosciencesUniversity Hospital of Toulouse, Toulouse, France. Toulouse NeuroImaging Center (ToNIC), University of Toulouse, INSERM, UPS, Toulouse, France. (1)
Department of Radiation Biology, Beijing Key Laboratory for Radiobiology, Beijing Institute of Radiation Medicine, Beijing 100850, China (1)
Department of System Biology, School of Life Sciences, Guangdong Provincial Key Laboratory of Cell Microenvironment and Disease Research, Shenzhen Key Laboratory of Cell Microenvironment, Southern University of Science and Technology, Shenzhen, 518055, China. (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
First Affiliated Hospital, School of Medicine, Zhejiang University (1)
Fudan University Shanghai Cancer Center, Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China. International Co-operation Laboratory on Signal Transduction, Eastern Hepatobiliary Surgery Institute/National Center for Liver Cancer, Naval Medical University. 225 Changhai Road, 200438 Shanghai, China. (1)
Head of Proteomics and Metabolomics Core Facility London Institute of Medical Sciences Medical Research Council (1)
Huazhong University of Science and Technology (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)

IsPrivate

False (1)

Study type

Transcription profiling by array (57)
RNA-seq of coding RNA (31)
RNA-seq of non coding RNA (8)
Methylation profiling by high throughput sequencing (5)
Comparative genomic hybridization by array (4)
ChIP-seq (4)
Transcription profiling by tiling array (3)
ChIP-chip by tiling array (1)
Plant - High-throughput sequencing (1)
Ribo-seq (1)
DNA-seq (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (909)
2022 (705)
2023 (669)
2024 (666)
2021 (576)
2020 (392)
2019 (301)
2018 (190)
2017 (176)
2016 (149)
2026 (141)
2015 (140)
2014 (127)
2013 (84)
2012 (50)
2011 (33)
2010 (27)
2009 (19)
2008 (14)
2007 (9)
2005 (6)
2006 (5)
2004 (1)
2003 (1)
2002 (1)
2000 (1)

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Development of a Chemiluminescence Immunoassay for Quantification of 25-Hydroxyvitamin D in Human Serum.

Not available

S-EPMC7416287 | biostudies-literature

Sertoli cell survival and barrier function are regulated by miR-181c/d-Pafah1b1 axis during mammalian spermatogenesis.

Not available

S-EPMC9411099 | biostudies-literature

Insights into Chemoreceptor MCP2201-Sensing D-Malate.

Not available

S-EPMC12112095 | biostudies-literature

Proteomic analysis of larval and adult shell matrix proteins in Crassostrea nippona by LC-MS/MS

This project contains proteomic profiles of shell matrix proteins (SMPs) from the Iwagaki oyster Crassostrea nippona, covering both life stage-specific shells (D-stage larval and adult shell) and shell microstructure-specific layers (prismatic, foliated, and chalky layers of the adult shell). These ...

ORGANISM(S): Crassostrea nippona

2026-02-09 | PXD064366 | Pride

Caspase-8-and Gasdermin D (GSDMD)-Dependent PANoptosis Participate in the Seasonal Atrophy of Scented Glands in Male Muskrats.

Not available

S-EPMC11591373 | biostudies-literature

The relationships of vitamin D, vitamin D receptor gene polymorphisms, and vitamin D supplementation with Parkinson's disease.

Not available

S-EPMC7460797 | biostudies-literature

RNA-seq of rat myocardial tissue to investigate the cardioprotective mechanism of baicalin in myocardial ischemia-reperfusion injury

This study aimed to investigate the cardioprotective mechanism of baicalin (BAI) against myocardial ischemia-reperfusion injury (MIRI) in rats. We performed RNA-seq on left ventricular myocardial tissue from three groups: Sham (vehicle control), I/R (ischemia-reperfusion injury model), and I/R+BAI (...

ORGANISM(S): Rattus norvegicus

2026-07-31 | E-MTAB-17471 | biostudies-arrayexpress

Novel Pyrazine-Bridged D-A-D Type Charge Neutral Probe for Membrane Permeable Long-Term Live Cell Imaging.

Not available

S-EPMC8672416 | biostudies-literature

Bai2003_G1phaseRegulation

This a model from the article: Theoretical and experimental evidence for hysteresis in cell proliferation. Bai S, Goodrich D, Thron CD, Tecarro E, Obeyesekere M. Cell Cycle. 2003 Jan-Feb;2(1):46-52. 12695688 , ...

2024-09-02 | BIOMD0000000242 | BioModels

Steric Effect of Antioxidant Diels-Alder-Type Adducts: A Comparison of Sanggenon C with Sanggenon D.

Not available

S-EPMC6222520 | biostudies-literature

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