Bal - OmicsDI

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Transcriptomics (9067)
Unknown (2164)
Genomics (505)
Proteomics (50)
Metabolomics (13)
Methylation profiling (10)
Other (8)
Genomic (2)
Models (1)

Organisms

Homo sapiens (3608)
Mus musculus (2738)
Arabidopsis thaliana (679)
Rattus norvegicus (508)
Saccharomyces cerevisiae (262)
Drosophila melanogaster (243)
Caenorhabditis elegans (90)
Danio rerio (72)
Escherichia coli (71)
Sus scrofa (60)
Gallus gallus (53)
Macaca mulatta (41)
Pseudomonas aeruginosa (40)
Medicago truncatula (38)
Oryza sativa (37)
Triticum aestivum (37)
Bos taurus (33)
Zea mays (31)
Xenopus laevis (27)
Schizosaccharomyces pombe (26)
Hordeum vulgare (26)
Glycine max (25)
Canis lupus familiaris (16)
Aspergillus niger (15)
Escherichia coli str. K-12 substr. MG1655 (13)
Oryza sativa Indica Group (11)
Vitis vinifera (11)
Pseudomonas aeruginosa PAO1 (11)
Solanum lycopersicum (11)
Populus tremula x Populus alba (10)

Organisms

Homo sapiens (132)
Mus musculus (91)
Macaca mulatta (19)
human lung metagenome (13)
Lactococcus lactis subsp. lactis (5)
Macaca fascicularis (5)
Sus scrofa (5)
Rattus norvegicus (5)
Equus caballus (4)
Human immunodeficiency virus 1 (2)
Mycobacteroides abscessus M159 (1)
Mycobacterium tuberculosis complex sp. (1)
oral-nasopharyngeal metagenome (1)
Chrysiogenes arsenatis DSM 11915 (1)
Brachypodium hybridum (1)
Macaca nemestrina (1)
human tracheal metagenome (1)
Bluetongue virus (1)
lung metagenome (1)
Viruses (1)
respiratory tract metagenome (1)
human nasopharyngeal metagenome (1)
Legionella pneumophila (1)
Mycobacteroides abscessus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
human metagenome (1)
uncultured bacterium (1)
Microbiota (1)
human gut metagenome (1)
metagenome (1)

Repository

biostudies-arrayexpress (8975)
ENA (423)
geo (191)
EGA (38)
pride (34)
MetaboLights (11)
MassIVE (10)
dbGaP (2)
MetabolomicsWorkbench (2)
PeptideAtlas (2)
BioModels (1)
iProX (1)
jPOST (1)
PanoramaPublic (1)

Tissue

Bronchoalveolar lavage (14)
Lung (13)
Lung (2)
Others (2)
Seed (2)
Bone marrow (2)
Macrophage (2)
Epithelial cell (2)
B cell (2)
Liver (2)
Neutrophil (2)
Cell culture (2)
Pneumocyte (1)
Alveolar macrophage (1)
Rectum (1)
Cecum (1)
Bronchial epithelial cell (1)
Epithelial cell of lung (1)
Tissue (1)
Sputum (1)
Stomach (1)
Heart (1)
Blood plasma (1)
Spleen (1)
Fibroblast (1)
Permanent cell line cell (1)
Kidney (1)
Colon (1)
T cell (1)
Blood (1)

Disease

Normal (85)
Breast cancer (12)
Osteosarcoma (5)
Colorectal cancer (4)
Prostate cancer (4)
None (4)
Adenocarcinoma (4)
Multiple myeloma (4)
Asthma (3)
Erythroleukemia (3)
Acute lymphoblastic leukemia (3)
Squamous cell carcinoma (3)
Colon adenocarcinoma (3)
Head and neck squamous cell carcinoma (3)
Chronic myelogenous leukemia (3)
Cancer (3)
Glioblastoma (3)
Colorectal adenocarcinoma (3)
Ovarian cancer (3)
Acute myeloid leukemia (3)
High grade glioblastoma (2)
Bladder carcinoma (2)
Myocardial infarction (2)
Colorectal Carcinoma (2)
None (2)
Hypertension (2)
Mild asthma (2)
Apparently healthy (2)
Infiltrating ductal carcinoma (2)
Breast adenocarcinoma (2)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (22)
Mass spectrometry (9)
Bottom-up proteomics (7)
Data-independent acquisition (3)
Top-down proteomics (3)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
NMR spectroscopy assay (1)
Mass spectrometry assay (1)
EI (1)
ESI (1)
All-ion fragmentation (1)
DiaPASEF (1)
SWATH MS (1)
SRM/MRM (1)
Data-dependent acquisition (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

418 [Affymetrix] (25)
Affymetrix GeneChip Scanner 3000 7G (16)
Affymetrix Fluidics Station 400 (14)
Illumina NovaSeq 6000 (12)
Affymetrix GeneChip(R) HT Scanner (9)
GeneChip Scanner 3000 [Affymetrix] (8)
G2500A Hewlett Packard (7)
Illumina HiSeq 2500 (7)
Illumina HiSeq 2000 (6)
Other (5)
NextSeq 550 (5)
NextSeq 500 (5)
Illumina HiSeq 4000 (4)
Gene Titan (3)
Affymetrix GeneChip Scanner 3000 (3)
GeneChip Scanner 3000 7G (3)
HP GeneArray [Affymetrix/HP] (3)
Affymetrix GeneChip Scanner 3000 (GCS3000) (2)
FS450 (2)
GCS3000 (2)
G2565BA DNA microarray scanner [Agilent] (2)
Illumina Genome Analyzer II (2)
Affymetrix (2)
None (2)
N/A (2)
DNBSEQ-G400 (2)
GeneTitan MultiChannel System (1)
GeneChip Clariom S mouse array cartridge and Affymetrix GeneTitan MultiChannel System (1)
GeneChip Pico Kit (Affymetrix/ThermoFisher) (1)
ReliaPrep RNA Miniprep System (Promega) (1)

Publication Date

2008 (2446)
2009 (1248)
2010 (745)
2012 (632)
2007 (629)
2013 (627)
2011 (603)
2014 (586)
2015 (519)
2016 (334)
2006 (148)
2005 (95)
2022 (78)
2020 (67)
2017 (67)
2019 (66)
2018 (61)
2025 (56)
2021 (51)
2004 (46)
2026 (42)
2024 (42)
2023 (31)
2003 (5)
2002 (1)

UNIPROT ID/AC

A0A1S3MBI7 (1)
A0A1S3RDV7 (1)
A0A1S3SLA8 (1)
B5X3P0 (1)
A0A1S3N3T3 (1)
A0A1S3NZZ4 (1)
A0A1S3P094 (1)
A0A1S3PY93 (1)
Q19VI0 (1)
A0A1S3M1N8 (1)
A0A1S3NHN0 (1)
A0A1S3KZD6 (1)
A0A1S3SD21 (1)
A0A1S3LDQ3 (1)
A0A1S3P3J9 (1)
A0A1S3LD76 (1)
A0A1S3LEH9 (1)
A0A1S3MF70 (1)
A0A1S3MF67 (1)
A0A1S3MEX0 (1)
A0A1S3MEU5 (1)
A0A1S3RYH9 (1)
A0A1S3RYI5 (1)
A0A1S3P4C7 (1)
A0A1S3P297 (1)
A0A1S3P8N0 (1)
A0A1S3PB08 (1)
A0A1S3N1B9 (1)
C0HBN7 (1)
A0A1S3LIF1 (1)

CHEBI ID

CHEBI:13097 (1)
CHEBI:21278 (1)
CHEBI:63163 (1)
CHEBI:6209 (1)
CHEBI:44590 (1)
CHEBI:21260 (1)
CHEBI:44513 (1)
CHEBI:6206 (1)
CHEBI:44708 (1)
CHEBI:44466 (1)
CHEBI:13094 (1)
CHEBI:47822 (1)
CHEBI:60107 (1)
CHEBI:21486 (1)
CHEBI:60111 (1)
CHEBI:43088 (1)
CHEBI:47823 (1)
CHEBI:28538 (1)
CHEBI:47819 (1)
CHEBI:47821 (1)
CHEBI:21601 (1)
CHEBI:7203 (1)
CHEBI:77859 (1)
CHEBI:19473 (1)
CHEBI:11524 (1)
CHEBI:1021 (1)
CHEBI:12542 (1)
CHEBI:47984 (1)
CHEBI:1022 (1)
CHEBI:42925 (1)

Metabolite Name

376.19282 (2)
278.15191 (2)
294.2197 (2)
278.15198 (2)
278.15203 (2)
477.28521 (2)
343.27228 (2)
465.30851 (2)
472.28938 (2)
422.21705 (2)
416.22749 (2)
414.28425 (2)
373.22163 (2)
351.17968 (2)
262.13191 (2)
231.14702 (2)
301.20015 (2)
242.12687 (2)
317.19526 (2)
418.24199 (2)
264.14727 (2)
351.14321 (2)
317.19516 (2)
317.1952 (2)
333.13286 (2)
252.11109 (2)
244.17878 (2)
230.16316 (2)
315.1795 (2)
401.2272 (2)

IsPrivate

False (1)

First Public Date

2025 (61)
2026 (46)
2024 (45)
2014 (45)
2023 (36)
2019 (35)
2021 (33)
2020 (29)
2022 (25)
2018 (19)
2015 (19)
2017 (14)
2016 (11)
2013 (5)

Classification

viruses (5)
bacteria (4)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (8016)
Comparative genomic hybridization by array (225)
Genotyping by array (123)
RNAi profiling by array (87)
ChIP-chip by tiling array (75)
RNA-seq of coding RNA (64)
ChIP-chip by array (63)
Transcription profiling by tiling array (60)
Other (34)
Methylation profiling by array (34)
ChIP-seq (30)
Unknown experiment type (19)
MicroRNA profiling by array (18)
Animal - One-color microarray (14)
Cell line - One-color microarray (13)
RNA-seq of coding RNA from single cells (7)
Transcription profiling by RT-PCR (6)
Methylation profiling by high throughput sequencing (6)
Human - One-color microarray (5)
RNA-seq of non coding RNA (5)
One-color microarray (4)
ChIP-chip by SNP array (3)
Translation profiling (3)
MicroRNA profiling by high throughput sequencing (3)
DNA-seq (3)
RNA-seq of total RNA (3)
Plant - One-color microarray (2)
Animal - High-throughput sequencing (2)
ATAC-seq (2)
Proteomic profiling by array (2)

Release Date

2008 (2455)
2009 (1268)
2010 (770)
2013 (666)
2012 (656)
2011 (652)
2014 (646)
2007 (634)
2015 (594)
2016 (417)
2022 (314)
2021 (297)
2025 (237)
2020 (232)
2023 (225)
2019 (194)
2018 (177)
2024 (175)
2017 (165)
2006 (158)
2005 (99)
2004 (48)
2026 (35)
2003 (9)
2002 (5)
2001 (3)
1999 (3)
2000 (2)
1998 (1)
1997 (1)

Lab affiliation

Systems Biology Ireland, University College Dublin (2)
IKVL, Lund University, Lund, Sweden (1)
Translational Genomics Research Institute, Phoenix, AZ, USA (1)
Head, T cell Lab La Trobe Institute for Molecular Science, La Trobe University 1 Kingsbury Drive, Bundoora, Vic 3086 Australia (1)
Biochemistry and Metabolism Department John Innes Centre Norwich UK (1)
Biochemistry and Metabolism Department John Innes Centre Norwich Research Park Norwich, UK (1)
Helmholtz Zentrum München, Institute of Lung Biology and Disease, Group Systems Medicine of Chronic Lung Disease, Member of the German Center for Lung Research (DZL), Munich, Germany (1)
University of North Carolina, Curriculum in Toxicology and Environmental Medicine, Chapel Hill, NC, USA (1)
Group Director OMICS, Integrated Bioanalysis AstraZeneca R&D / Clinical Pharmacology & Safety Sciences 121 Oyster Point Blvd. South San Francisco, CA 94080, USA (1)
Associate Professor Pulmonary/Critical Care Department of Medicine University of Minnesota (1)
Division of Infection Medicine, BMC Faculty of Medicine Lund University Lund, Sweden (1)
Department of Life Sciences, University of Siena Via Aldo Moro 2, 53100 Siena, Italy (1)
The University of Edinburgh/ Centre for Inflammation Research The Queen's Medical Research Institute Edinburgh BioQuarter 47 Little France Crescent Edinburgh EH16 4TJ (1)
Biocev-Institute of Microbiology, The Czech Academy of Sciences, Prague, Czech Republic (1)
Institute of Molecular Medicine and Experimental Immunology, BMZ-II, Building 12, University Hospital Bonn (1)
Division of Pulmonary, Allergy and Critical Care Department of Medicine University of Minnesota (1)
Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, USA (1)
Associate Professor of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine University of Minnesota (1)
Kocaeli University, Medical School, Department of Medical Biology,41001, Umuttepe, Kocaeli, Turkiye (1)
Proteomics Core Facility, School of Science, National and Kapodistrian University of Athens, Athens, Greece (1)
Laboratory of Structural Biology and Cell Signaling, Institute of Microbiology, The Czech Academy of Sciences, Prague, 14220, Czech Republic (1)
Computational and Experimental Biology Group, CEDOC, Chronic Diseases Research Centre, NOVA Medical School, Faculdade de Ciencias Medicas, Universidade NOVA de Lisboa, Campo dos Martires da Patria, 130, 1169-056 Lisboa, Portugal (1)
Division of Chemistry I, Department of Medical Biochemistry & Biophysics Karolinska Institutet Stockholm, Sweden (1)
University of Minnesota, Medical School, Associate Professor of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine (1)
Segal Cancer Proteomics Centre, Lady Davis Institute for Medical Research, Jewish General Hospital, Montréal, Quebec, H3T 1E2, Canada Division of Experimental Medicine, McGill University, Montréal, Quebec H4A 3J1, Canada Gerald Bronfman Department of Oncology, McGill University, Montréal, Quebec H4A 3T2, Canada (1)
Affiliation: Computational and Experimental Biology Group National Health Institute Dr. Ricardo Jorge, (INSA,I.P.) Av Padre Cruz, 1649-016 Lisboa-Portugal phone: 00351-217508124 (1)
Alfred E. Mann Department of Biomedical Engineering, University of Southern California, Los Angeles, CA, 90089, USA Department of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine of USC, Los Angeles, CA, 90033, USA (1)
Host Septomics, ZIK Septomics, University Hospital Jena, Jena,Germany (1)
Associate Professor of Medicine, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, University of Minnesota, United States (1)
Mucin Biology Group Proteomics Laboratory Department of Medical Biochemistry and Cell Biology University of Gothenburg (1)

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LCMS untargeted BAL Fluid analysis from COPD subjects

Not available

ORGANISM(S): Homo sapiens

ST001216 | MetabolomicsWorkbench

Short-chain fatty acid analysis in bronchoalveolar lavage fluid (BAL SCFA)

Not available

ORGANISM(S): Homo sapiens

ST000273 | MetabolomicsWorkbench

HLA-DR peptides from human BAL and EBV-transformed B cells

Optimization of the protocols for isolation HLA-DR (MHCII) peptides from human BAL.

ORGANISM(S): Homo sapiens (Human)

2016-08-08 | PXD002439 | Pride

Segmental Allergen Challenge Regulates Gene Expression In Bronchoalveolar Lavage (BAL) Cells From Atopic and Mild Asthmatic Subjects

Segmental allergen challenge increases the percentage of eosinophils in bronchoalveolar lavage (BAL) cells. Mepolizumab, an anti-IL-5 therapeutic antibody, decreases the number of eosinophils in bronchoalveolar lavages (BAL). The use of both procedures allows to define genes that are either expresse...

ORGANISM(S): Homo sapiens

2013-05-01 | E-GEOD-46159 | biostudies-arrayexpress

human BAL metagenome

human BAL metagenome Raw sequence reads

PRJNA835222 | ENA

BAL metagenome

BAL samples raw sequence reads from lung transplant recipients

PRJNA494034 | ENA

Rat Bronchoalveolar Lavage Proteome Changes Following E-cigarette Aerosol Exposures

Label free quantitative proteomics of bronchoalveolar lavage (BAL) fluid collected from rats exposed to e-cigarette aerosols (humidified air control, PG/VG, PG/VG + Nicotine, or PG/VG + Nicotine + Vanillin)

ORGANISM(S): Rattus Norvegicus (ncbitaxon:10116)

2023-01-06 | MSV000091015 | MassIVE

BAL proteomic signature of lung adenocarcinoma in IPF patients and its transposition in serum samples for less invasive diagnostic procedures

Idiopathic pulmonary fibrosis (IPF) is a form of chronic and irreversible fibrosing interstitial pneumonia of unknown aetiology, with an average survival time of 3-5 years after diagnosis. Emerging evidence suggests that IPF increases the risk of lung carcinogenesis. Both diseases show similarities ...

ORGANISM(S): Homo sapiens (Human)

2023-03-11 | PXD037720 | Pride

Ipf Lung cancer Proteomics Apolipoprotein e Nampt Calgranulin b Biomarkers Bal Profilin 1 Apolipoprotein a1

Gene expression profiling on bronchoalveolar lavage (BAL) cells treated with all-trans-retinoic acid (ATRA)

All-trans retinoic acid (ATRA) is a potent retinoid, which has been used successfully in different clinical settings as a potential drug to treat COPD and emphysema. In alveolar macrophages, ATRA selectively down-regulates MMP-9 and up-regulates TIMP-1 expression. In the present study, we analyzed a...

ORGANISM(S): Homo sapiens

2010-09-04 | E-GEOD-23704 | biostudies-arrayexpress

SAINTS-CF-BAL-MMS-OPS

comparison of MMS, OPS and BAL samples in metagenomic and clinical microbiological surveillance

PRJEB67893 | ENA

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