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TranscriptomicsHigh-resolution transcriptome analysis with long-read RNA sequencing
Ongoing improvements to next generation sequencing technologies are leading to longer sequencing read lengths, but a thorough understanding of the impact of longer reads on RNA sequencing analyses is lacking. To address this issue, we generated and compared two RNA sequencing datasets of differing r...
ORGANISM(S): Homo sapiens 
2014-09-25 | E-GEOD-57862 | biostudies-arrayexpress
GenomicsSingle-Cell Sequencing Reveals Lineage-Specific Dynamic Genetic Regulation of Gene Expression During Human Cardiomyocyte Differentiation
Single-Cell Sequencing Reveals Lineage-Specific Dynamic Genetic Regulation of Gene Expression During Human Cardiomyocyte Differentiation
PRJNA733138 | ENA
OtherImpact of regulatory variation from RNA to protein
Data from ProteomeXchange, PXD ID: PXD001406. Experiment: GM19138, MSB14233, file: GM19138_MSB14233_29.mzml. Published as part of Science 2014 Dec. 18 . From the Abstract: {{i}} ... we mapped genetic variants that are associated with eQTLs, ribosome occupancy (rQTLs), or protein abundance (pQTLs). ...
ORGANISM(S): Homo_sapiens_viruses, Human 
GPM32320005946 | GPMDB
Resource Reanalysis 
OtherImpact of regulatory variation from RNA to protein
Data from ProteomeXchange, PXD ID: PXD001406. Experiment: GM18519, MSB14195, file: GM18519_MSB14195_16.mzml. Published as part of Science 2014 Dec. 18 . From the Abstract: {{i}} ... we mapped genetic variants that are associated with eQTLs, ribosome occupancy (rQTLs), or protein abundance (pQTLs). ...
ORGANISM(S): Homo_sapiens_viruses, Human 
GPM11210033257 | GPMDB
Resource Reanalysis 
TranscriptomicsTranscriptome analysis reveals differential splicing events in IPF lung tissue
Objectives: Idiopathic pulmonary fibrosis (IPF) is a complex disease in which a multitude of proteins and networks are disrupted. Interrogation of genome-wide transcription through RNA sequencing (RNA-Seq) enables the determination of genes whose differential expression is most significant in IPF, a...
ORGANISM(S): Homo sapiens 
2014-03-27 | E-GEOD-52463 | biostudies-arrayexpress
TranscriptomicsImpact of regulatory variation from mRNA to protein
Genetic variants that impact gene regulation are important contributors to human phenotypic variation. For this reason, considerable efforts have been made to identify genetic associations with differences in mRNA levels of nearby genes, namely, cis expression quantitative trait loci (eQTLs). The ph...
ORGANISM(S): Homo sapiens 
2014-12-19 | E-GEOD-61742 | biostudies-arrayexpress
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