Berghei - OmicsDI

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Unknown (1147)
Genomics (252)
Transcriptomics (166)
Proteomics (96)
Other (4)
Models (1)
Methylation profiling (1)
Metabolomics (1)

Organisms

Plasmodium berghei (87)
Andropogon gerardi (85)
Bacteria (85)
Canis lupus familiaris (85)
Clostridium perfringens (85)
Cnidaria (85)
Cricetulus griseus (85)
Eukaryota (85)
Fasciola (85)
Hepatitis B virus (85)
Human betaherpesvirus 5 (85)
Madurella mycetomatis (85)
Mus musculus (49)
Plasmodium berghei ANKA (33)
Plasmodium falciparum (19)
Anopheles gambiae (17)
Homo sapiens (5)
Plasmodium yoelii (4)
Anopheles stephensi (3)
Plasmodium falciparum 3D7 (2)
Plasmodium chabaudi (2)
Rattus norvegicus (2)
Plasmodium yoelii yoelii 17XNL (1)
Aedes aegypti (1)
mixed sample (1)
Plasmodium knowlesi (1)
Plasmodium yoelii yoelii (1)
Plasmodium vivax (1)
Plasmodium sp. KYS10 (1)
cellular organisms (1)

Organisms

Plasmodium berghei (52)
Plasmodium berghei ANKA (27)
Mus musculus (27)
Plasmodium falciparum (9)
Anopheles gambiae (7)
Plasmodium (2)
Plasmodium yoelii yoelii (2)
Rattus norvegicus (2)
Homo sapiens (2)
Plasmodium yoelii YM (1)
Plasmodium chabaudi (1)
Grammomys surdaster (1)
Plasmodium yoelii 17X (1)
Anopheles anthropophagus (1)
Anopheles dirus (1)
Plasmodium falciparum 3D7 (1)
mouse metagenome (1)
mouse gut metagenome (1)
Anopheles stephensi (1)
unidentified (1)

Repository

ENA (224)
geo (136)
pride (85)
biostudies-arrayexpress (61)
MassIVE (5)
ExpressionAtlas (2)
iProX (2)
jPOST (2)
PAXDB (2)
Cell Collective (1)
MetaboLights (1)

Tissue

Blood (15)
Blood cell (11)
Gametocyte (9)
Blood plasma (5)
Cell culture (4)
Erythrocyte (2)
Saliva (2)
Bile (1)
Cell suspension culture (1)
Dendritic cell (1)
Epithelial cell (1)
Hemolymph (1)
Hepatocyte (1)
Macrophage (1)
Midgut (1)
Ookinete (1)
Placenta (1)
Salivary gland (1)
Schizont (1)
Spleen (1)
Tachyzoite (1)
Zygote (1)

Disease

Malaria (18)
Plasmodium falciparum malaria (14)
Cerebral malaria (3)
P. berghei NK65 infected erythrocyte's infection (1)
P. berghei ANKA GFP sporozoite's infection (1)
Uninfected 11dpi (1)
Plasmodium berghei-infected cells (1)
Plasmodium berghei CTRP knockout strain (Dessens et al., 1999) infection (1)

Technology Type

Mass Spectrometry (85)
Shotgun proteomics (39)
Affinity purification coupled with mass spectrometry proteomics (25)
Bottom-up proteomics (16)
Data-dependent acquisition (4)
SWATH MS (4)
Gel-based experiment (3)
Top-down proteomics (3)
Mass spectrometry (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
RNA mass spectrometry (1)

Instrument Platform

Illumina HiSeq 4000 (3)
FUJIFILM BAS-5000 scanning hardware (2)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)
NextSeq 550 (2)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
LTQ XL (2)
LTQ XL ETD (2)
Tecan LS 300 scanner (1)
418 [Affymetrix] (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Illumina HiSeq 2500 (1)
Orbitrap Fusion (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2023 (31)
2022 (29)
2021 (24)
2025 (23)
2024 (22)
2015 (20)
2019 (15)
2026 (14)
2020 (14)
2010 (14)
2016 (13)
2017 (12)
2012 (12)
2014 (10)
2018 (9)
2009 (8)
2013 (6)
2007 (6)
2008 (5)
2011 (4)
2006 (3)
2005 (2)

UNIPROT ID/AC

5833.MAL13P1.267 (2)
5833.MAL13P1.269 (2)
5833.MAL13P1.325 (2)
5833.MAL13P1.334 (2)
5833.MAL7P1.78 (2)
5833.MAL8P1.208 (2)
5833.MAL8P1.320 (2)
5833.PF11_0033 (2)
5833.PF11_0263 (2)
5833.PF11_0512 (2)
5833.PF13_0305 (2)
5833.PF13_0321 (2)
5833.PF14_0001 (2)
5833.PF14_0009 (2)
5833.PF14_0173 (2)
5833.PF14_0734 (2)
5833.PF14_0751 (2)
5833.PF14_0756 (2)
5833.PF14_0759 (2)
5833.PFA0105w (2)
5833.PFA0120c (2)
5833.PFA0705c (2)
5833.PFB0050c (2)
5833.PFB0280w (2)
5833.PFB0925w (2)
5833.PFB0946c (2)
5833.PFC1011c (2)
5833.PFC1075w (2)
5833.PFD0075w (2)
5833.PFD0100c (2)

CHEBI ID

CHEBI:34589 (1)
CHEBI:34587 (1)
CHEBI:34031 (1)
CHEBI:157640 (1)
CHEBI:148564 (1)
CHEBI:2482 (1)
CHEBI:62728 (1)
CHEBI:2290 (1)
CHEBI:80455 (1)
CHEBI:16066 (1)
CHEBI:28453 (1)
CHEBI:81086 (1)
CHEBI:177269 (1)
CHEBI:190406 (1)
CHEBI:15439 (1)
CHEBI:82564 (1)
CHEBI:15769 (1)
CHEBI:82590 (1)
CHEBI:82559 (1)
CHEBI:47248 (1)
CHEBI:177249 (1)
CHEBI:27832 (1)
CHEBI:80612 (1)
CHEBI:28807 (1)
CHEBI:27694 (1)
CHEBI:175586 (1)
CHEBI:4581 (1)
CHEBI:17808 (1)
CHEBI:28279 (1)
CHEBI:35490 (1)

Metabolite Name

1,1-Dichloroethylene (1)
Bromobenzene-3,4-oxide (1)
4-Bromophenol (1)
4-Phosphopantothenoylcysteine (1)
20-Hydroxy-leukotriene B4 (1)
2'-Deoxyinosine triphosphate (1)
Coproporphyrinogen I (1)
Agmatine (1)
N-Acetylneuraminate (1)
Bromobenzene-2,3-oxide (1)
7alpha-Hydroxy-3-oxo-4-cholestenoate (1)
4-Trimethylammoniobutanal (1)
11b-Hydroxyprogesterone (1)
Thromboxane A2 (1)
19(S)-HETE (1)
20-Hydroxyeicosatetraenoic acid (1)
11,12-Epoxyeicosatrienoic acid (1)
14,15-Epoxy-5,8,11-eicosatrienoic acid (1)
8,9-Epoxyeicosatrienoic acid (1)
5,6-Epoxy-8,11,14-eicosatrienoic acid (1)
Prostaglandin I2 (1)
9,10-Epoxyoctadecenoic acid (1)
15(S)-HETE (1)
5-Acetylamino-6-formylamino-3-methyluracil (1)
D-Galactose (1)
D-Fructose (1)
D-Glucose (1)
12,13-EpOME (1)
5-HETE (1)
Uracil (1)

First Public Date

2014 (32)
2024 (29)
2021 (24)
2022 (21)
2025 (16)
2023 (16)
2015 (15)
2019 (13)
2020 (12)
2026 (11)
2016 (11)
2018 (7)
2017 (7)
2013 (4)
2012 (3)
2010 (2)
2011 (1)

Classification

protozoa (96)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (37)
RNA-seq of coding RNA (8)
RNA-seq of coding RNA from single cells (4)
Unknown experiment type (3)
High-throughput sequencing (2)
RNA-seq of total RNA (2)
RIP-chip by array (1)
Trajectory (1)
Transcription profiling by tiling array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2020 (87)
2021 (86)
2017 (85)
2023 (82)
2024 (76)
2022 (76)
2019 (74)
2014 (72)
2018 (72)
2016 (64)
2025 (60)
2015 (60)
2012 (55)
2013 (49)
2010 (48)
2011 (33)
2009 (29)
2008 (27)
2007 (21)
2026 (13)
2005 (13)
2006 (9)
2001 (5)
2004 (4)
2002 (3)
2000 (2)
2003 (1)
1999 (1)
1998 (1)

Lab affiliation

Wellcome Trust Sanger Institute (5)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Department of Microbiology and Molecular Medicine, CMU, University of Geneva, Geneva, Switzerland (3)
Plateforme P3S - UMS PASS 37 - Sorbonne Universite - INSERM (3)
School of Life Sciences, Queens Medical Centre, University of Nottingham, Nottingham, NG7 2UH (3)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, CH-1211 Switzerland (2)
Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil (2)
Functional Proteomics, ICR (2)
Institute of Life Sciences, Bhubaneswar, India (2)
Integrative Parasitology, Centre for Infectious Diseases, University Hospital Heidelberg, Heidelberg University Medical Faculty; Heidelberg, Germany (2)
Laboratory of Protein Chemistry and Biochemistry, Department of Cell Biology, Institute of Biology, University of Brasilia, Brasilia, DF 70910–900, Brazil (2)
Molecular Parasitology and Entomology Unit,Laboratory of Malaria and Vector Research, National Institutes of Health. USA. (2)
University of Geneva, Faculty of Medicine, Geneva, Switzerland (2)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (1)
Biologie des interactions hôte-parasite Institut Pasteur (1)
Center for Infection and Immunity of Lille, Biology of Apicomplexan Parasites, UMR 9017 CNRS, U1019 INSERM, Université de Lille, Institut Pasteur de Lille, Lille, France. (1)
Center for Infection and Immunity of Lille, Inserm U1019-CNRS UMR 8204, Université de Lille, Institut Pasteur de Lille, 1 Rue du Professeur Calmette, F-59000 Lille, France (1)
Centre d'Infection et d'Immunité de Lille Univ. Lille (CIIL), Univ. Lille, CNRS UMR 8204, Inserm U1019, CHU Lille, Institut Pasteur de Lille, F-59000 Lille, France. (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH) (1)
Department of Biochemistry and Molecular Biology, Bio21 Institute, The University of Melbourne, Parkville, Victoria, Australia (1)
Department of Biochemistry, University of Cambridge (1)
Department of Immunology, College of Basic Medical Sciences, China Medical University (1)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, CH-1211 Geneva, Switzerland. (1)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Geneva, Switzerland. (1)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Switzerland (1)
Department of Microbiology and Molecular Medicine, University of Geneva, Geneva , Switzerland (1)
Department of Molecular Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Switzerland (1)
Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo São Paulo, Brazil (1)
Division of Cell and Molecular Biology, Imperial College London, UK (1)
Drug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Australia (1)

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Transcriptomic analysis of Anopheles stephensi salivary glands during Plasmodium berghei infection

RNA-seq of Anopheles stephensi salivary glands during Plasmodium berghei infection

ORGANISM(S): Anopheles stephensi

2015-11-05 | E-MTAB-3964 | biostudies-arrayexpress

Global expression profiling reveals shared and distinct transcript signatures in arrested act2(-) and CDPK4(-) Plasmodium berghei gametocytes

Gametocytogenesis and gametogenesis in malaria parasites are complex processes of cell differentiation and development likely involving many gene products. Gametocytes develop in the blood of the vertebrate host but mature gametocytes are not activated until taken up by the mosquito vector. Several ...

ORGANISM(S): Plasmodium berghei

2015-09-15 | E-GEOD-65032 | biostudies-arrayexpress

RNA-seq analyses of gene expression changes in the salivary glands of Anopheles gambiae elicited by Plasmodium berghei infection

Salivary glands are the only mosquito tissue invaded by Plasmodium sporozoites being a key stage for the effective parasite transmission and maturation, making knowledge regarding Anopheles sialome highly relevant to understand this process. In this study, we report for the first time a transcriptom...

ORGANISM(S): Anopheles gambiae S

2015-06-01 | E-MTAB-3415 | biostudies-arrayexpress

In this study, we applied a proteomic approach to identify proteins differentially released/secreted by female and male gametocytes of the rodent Plasmodium berghei activated to form gametes. We compared secreted molecules of the wild type gametocytes with those of a transgenic line defective in mal...

ORGANISM(S): Plasmodium Berghei Anka (ncbitaxon:5823)

2019-12-04 | MSV000084655 | MassIVE

Loss of Serine/Threonine Protein Phosphatase 6 Severely Impairs Sexual Stage Development in Malaria Parasite Plasmodium berghei

Protein phosphorylation plays a critical role during the development of malaria parasites. Here, we performed a functional analysis of the Plasmodium berghei Ser/Thr protein phosphatase 6 (PbPP6), which was associated with the plasma membrane of macrogametes and ookinetes. Compared to wild-type P. b...

ORGANISM(S): Plasmodium berghei

2025-06-27 | PXD063164 | Pride

Loss of serine/threonine protein phosphatase 6 severely impairs sexual stage development in malaria parasite plasmodium berghei

Detergent Resistant Memebrane Proteome of Plasmodium Berghei trophozoites and gametocytes

Proteomic characterization of complexity and dynamics of detergent resistant membranes of sexual and asexual stages of the rodent malaria parasite Plasmodium berghei

ORGANISM(S): Plasmodium Berghei Anka (ncbitaxon:5823)

2016-08-31 | MSV000080108 | MassIVE

Plasmodium berghei Gametocytogenesis

Transcriptional profiling of gametocyte non-producer lines in Plasmodium berghei Transcriptome of gametocyte non producer lines (natural and genetic KO) and parental (820) lines. The aim of the study was to identify key genes involved in the decision to commit to gametocytogenesis in Plasmodium ber...

ORGANISM(S): Plasmodium berghei

2013-12-13 | E-GEOD-53246 | biostudies-arrayexpress

Transcription profiling of Plasmodium berghei-infected hepatocytes at different times post-infection

Using in vitro models, total RNA was extracted from Plasmodium berghei infected hepatocytes at different time points (6,12,18,24 hours post-infection) and hybridized with Affymetrix microarrays. These genes are candidate for functional analysis, and we aim to use different tools to manipulate their ...

ORGANISM(S): Plasmodium berghei

2007-09-15 | E-MEXP-667 | biostudies-arrayexpress

Plasmodium berghei

Plasmodium berghei Gametocytogenesis

PRJNA231246 | ENA

Plasmodium berghei

Genome sequencing analysis of Plasmodium berghei mutator parasites

PRJDB2326 | ENA

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