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MetabolomicsMetabolomic Responses of Arabidopsis Suspension Cells to Bicarbonate under Light and Dark Conditions
Global CO2 level presently recorded at 400 ppm is expected to reach 550 ppm in 2050, an increment likely to impact plant growth and productivity. Using targeted LC-MS and GC-MS platforms we quantified 229 and 29 metabolites, respectively in a time-course study to reveal short-term responses to diffe...
2017-04-25 | MTBLS311 | MetaboLights
MetabolomicsMetabolomic Responses of Guard Cells and Mesophyll Cells to Bicarbonate
Anthropogenic CO2 presently at 400 ppm is expected to reach 550 ppm in 2050, an increment expected to affect plant growth and productivity. Paired stomatal guard cells (GCs) are the gate-way for water, CO2, and pathogen, while mesophyll cells (MCs) represent the bulk cell-type of green leaves mainly...
2017-03-31 | MTBLS309 | MetaboLights
TranscriptomicsTranscriptional profiling of Enterococcus faecalis cells exposed to sodium bicarbonate for 15 minutes in the ate exponential growth phase.
In an effort to begin to delineate the bicarbonate regulon, we used microarray analysis with cells grown to late exponential growth phase (3 hr) and then submitted to a 15 min exposure with 0.1 M NaHCO3. Our goal was to define the first set of genes affected by the presence of bicarbonate.
ORGANISM(S): Enterococcus faecalis 
2010-01-06 | E-MEXP-2518 | biostudies-arrayexpress
ModelsWhitcomb2004_Bicarbonate_Pancreas
A mathematical model of the pancreatic duct cell generating high bicarbonate concentrations in pancreatic juice David C Whitcomb, G Bard Ermentrout, Pancreas 2004 29:e30-40; PubMedID:15257112 Abstract: OBJECTIVE: To develop a simple, physiologically based mathema...
2024-09-02 | BIOMD0000000327 | BioModels
TranscriptomicsPseudonocardia dioxanivorans strain CB1190 during growth with H2/bicarbonate or pyruvate
Analysis of gene expression in Pseudonocardia dioxanivorans strain CB1190 during growth with H2/bicarbonate or pyruvate Two treatments, based on carbon/energy source used for growth: pyruvate and H2/bicarbonate. Triplicate microarrays (biological replicates) were prepared for each treatment. Pyruvat...
ORGANISM(S): Pseudonocardia dioxanivorans CB1190 
2013-04-24 | E-GEOD-41145 | biostudies-arrayexpress
ProteomicsBicarbonate induced redox proteome changes in Arabidopsis suspension cells
Climate change as a consequence of increasing atmospheric CO2 affects plant growth and productivity. CO2 is not only a carbon donor for photosynthesis but also an environmental signal that can perturb cellular redox homeostasis and lead to modifications of redox-sensitive proteins. Although redox re...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2017-02-14 | PXD004963 | Pride
Arabidopsis thaliana Bicarbonate Redox-proteomics Iodotmt Co2 Oxidative stress Itraq 
TranscriptomicsTranscription profiling of 3 Bacillus cereus strains in aerobic or CO2-bicarbonate atmospheres
Growth of 3 related Bacillus strains in a semi-defined medium in two different atmospheres (14% CO2 and high aeration)
ORGANISM(S): Bacillus cereus 
2009-02-06 | E-MEXP-2036 | biostudies-arrayexpress
TranscriptomicsControl of Virulence Gene Expression in Citrobacter rodentium by Trascription Factor RegA
Identification of the targets of RegA with and without bicarbonate stimulation by comparing RegA knockout to multicopy RegA transgenics. RegA is an AraC like transcription factor identified in a mutational screen for virulence genes in Citrobacter rodentium, an attaching and effacing pathogen that ...
ORGANISM(S): Citrobacter rodentium 
2010-05-19 | E-GEOD-12876 | biostudies-arrayexpress
GenomicsTargeting the bicarbonate transporter SLC4A4 overcomes immunosuppression and immunotherapy resistance in pancreatic cancer
Targeting the bicarbonate transporter SLC4A4 overcomes immunosuppression and immunotherapy resistance in pancreatic cancer
EGAS00001006334 | EGA
ProteomicsRedox proteomic analysis of H2O2 -treated Jurkat cells and effects of bicarbonate and peroxiredoxins 1 and 2
Oxidation of thiol proteins and redox signaling occur in cells exposed to H2O2 but mechanisms are unclear. We used redox proteomics to seek evidence of oxidation of specific proteins either by a mechanism involving reaction of H2O2 with CO2/bicarbonate to give the more reactive peroxymonocarbonate...
ORGANISM(S): Homo Sapiens 
2024-07-08 | PXD053738 |
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