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ProteomicsA mass spectrometry-based approach for the identification of Kpnβ1 binding partners in cancer cells
Karyopherin beta 1 (Kpnβ1) is the principal nuclear importer of cargo proteins and plays a role in many cellular processes. Its expression is upregulated in cancer and essential for cancer cell viability, thus the identification of its binding partners might help in the discovery of anti-cancer ther...
ORGANISM(S): Homo sapiens (Human) 
2022-11-03 | PXD034805 | Pride
Cancer Kpnb1 
GenomicsRBFOX2 alter splicing outcome in distinct binding modes with multiple protein partners
RBFOX2 alter splicing outcome in distinct binding modes with multiple protein partners
PRJNA590496 | ENA
TranscriptomicsTranscriptome profiling of genes regulated by RXR and its partners in monocyte-derived dendritic cells
CD14+ human monocytes differentiating into DCs in the presence of IL4 and GM-CSF were treated with agonists for RXR and its partners or vehicle 18 hours after plating (experiment with RXR and permissive partners, donor 1-3) or 14 hours after plating (experiment with nonpermissive partners, donor 4-6...
ORGANISM(S): Homo sapiens 
2010-09-01 | E-GEOD-23073 | biostudies-arrayexpress
ProteomicsIdentification of the B7-H3 Interaction Partners Using a Proximity Labeling Strategy
B7-H3 has emerged as a promising target for cancer therapy due to its high expression in various types of cancer cells. It not only regulates the activity of immune cells but also modulates the signal transduction and metabolism of cancer cells. However, the specific interaction partners of B7-H3 st...
ORGANISM(S): Homo Sapiens 
2024-12-23 | PXD059197 |
GenomicsRegulation of Megakaryocytic differentiation in Cell Line Models by Dynamic Combinatorial Interactions of RUNX1 with Its Cooperating Partners
Regulation of Megakaryocytic differentiation in Cell Line Models by Dynamic Combinatorial Interactions of RUNX1 with Its Cooperating Partners Examination of RUNX1 binding in K562 cells, before and following TPA induction and CMK cells. Examination of GATA1 and FOS binding and H3K4me1 and H3K27me3 mo...
ORGANISM(S): Homo sapiens 
2011-01-10 | E-GEOD-24777 | biostudies-arrayexpress
ProteomicsBinding partners to Testis Specific Antigen, TSA70
A testis specific antigen, TSA70 was identified in the lab which was homolgous to the sperm tail outer dense fiber protein (ODF2). ODFs are disulphide stabilised during epididymal maturation and are required for sperm motility. ODF2 is reported to bind macrophage migration inhibitory factor (MIF), a...
ORGANISM(S): Rattus norvegicus (Rat) 
2020-01-23 | PXD002296 | Pride
Rat Mif Odf2 
OtherRNA binding partners of the post-transcriptional regulator CsrA
Analysis of RNA binding partners of the post-transcriptional regulator CsrA to translation during exponential growth in Escherichia coli
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2017-12-06 | GSE102380 | GEO
GenomicsFOXL2 interaction with different binding partners regulates the dynamics of ovarian development
FOXL2 interaction with different binding partners regulates the dynamics of ovarian development
PRJNA992534 | ENA
ProteomicsIdentification of novel blood-borne soluble binding partners of factor H-related proteins
The deposition of circulating complement factor H-related (FHR) proteins in tissues around the body has been implicated in a series of complement-mediated diseases. However, the array of blood-borne binding partners with which they interact remains unclear. Here, we identify novel blood-borne bindin...
ORGANISM(S): Homo sapiens (Human) 
2026-03-30 | PXD072296 | Pride
Fhr Affinity proteomics Blood 
GenomicsThe SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators - ChIP-seq
The heptarepeats of the C-terminal domain of Pol II are extensively modified throughout the transcription cycle. The CTD coordinates RNA synthesis and processing by recruiting transcription regulation factors as well as RNA capping, splicing and 3’end processing factors. The SPOC domain of PHF3 was ...
ORGANISM(S): Homo sapiens 
2023-02-22 | E-MTAB-11506 | biostudies-arrayexpress
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