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TranscriptomicsSex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds
We have performed a comparison of global patterns of gene expression between two bird species, the chicken and zebra finch, especially with regard to sex bias of autosomal vs. Z chromosome genes, dosage compensation and evolution of sex bias. Both species appear to lack a Z chromosome-wide mechanism...
ORGANISM(S): Taeniopygia guttata 
2010-02-10 | E-GEOD-20035 | biostudies-arrayexpress
TranscriptomicsLongitudinal and Diurnal Experiments of M. hapla and M. truncatula
We have infected the model legume Medicago truncatula with Meloidogyne hapla and harvested tissue over a time course. Transcriptome sequencing was performed on each sample using the Illumina RNA-Seq method. [Longitudinal Experiment] RNA was isolated from M. hapla eggs and pre-penetration juveniles...
ORGANISM(S): root metagenome 
2017-04-30 | E-MTAB-4724 | biostudies-arrayexpress
TranscriptomicsThe impact of experience-dependent and independent factors on gene expression in songbird brain [e14]
Songbirds provide rich natural models for studying the relationships of brain anatomy, behavioral function, environmental signals and gene expression. Under the Songbird Neurogenomics Initiative, investigators from more than a dozen laboratories collected brain samples from six species of songbird ...
ORGANISM(S): Taeniopygia guttata 
2012-05-30 | E-GEOD-36746 | biostudies-arrayexpress
TranscriptomicsDevelopmental shifts in gene expression in the auditory forebrain during the sensitive period for song learning
A male zebra finch begins to learn to sing by memorizing a tutorM-bM-^@M-^Ys song during a sensitive period in juvenile development. Tutor song memorization requires molecular signaling within the auditory forebrain. Using microarray and in situ hybridizations, we tested whether the auditory forebra...
ORGANISM(S): Taeniopygia guttata 
2012-03-24 | E-GEOD-36657 | biostudies-arrayexpress
TranscriptomicsRNA-seq of 6 tissues from Monodelphis domestica to investigate the evolution of gene expression levels in mammalian organs
This experiment contains the subset of data corresponding to gray short-tailed opossum RNA-Seq data from experiment E-GEOD-30352 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30352/), which goal is to understand the dynamics of mammalian transcriptome evolution. To study mammalian transcript...
ORGANISM(S): Monodelphis domestica 
2011-10-12 | E-MTAB-3719 | biostudies-arrayexpress
TranscriptomicsRNA-seq of 6 tissues from Homo sapiens to investigate the evolution of gene expression levels in mammalian organs
This experiment contains the subset of data corresponding to human RNA-Seq data from experiment E-GEOD-30352 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30352/), which goal is to understand the dynamics of mammalian transcriptome evolution. To study mammalian transcriptome evolution at hig...
ORGANISM(S): Homo sapiens 
2011-10-12 | E-MTAB-3716 | biostudies-arrayexpress
TranscriptomicsRNA-seq of 6 tissues from Macaca mulatta to investigate the evolution of gene expression levels in mammalian organs
This experiment contains the subset of data corresponding to rhesus macaque RNA-Seq data from experiment E-GEOD-30352 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30352/), which goal is to understand the dynamics of mammalian transcriptome evolution. To study mammalian transcriptome evoluti...
ORGANISM(S): Macaca mulatta 
2011-10-12 | E-MTAB-3717 | biostudies-arrayexpress
TranscriptomicsRNA-seq of 6 tissues from Mus musculus to investigate the evolution of gene expression levels in mammalian organs
This experiment contains the subset of data corresponding to mouse RNA-Seq data from experiment E-GEOD-30352 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30352/), which goal is to understand the dynamics of mammalian transcriptome evolution. To study mammalian transcriptome evolution at hig...
ORGANISM(S): Mus musculus 
2011-10-12 | E-MTAB-3718 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of human brain, spleen, skeletal muscle and whole blood identifies tissue-specific methylation at developmental gene loci
To compare the CpG Island methylome of human tissues.
ORGANISM(S): Homo sapiens 
2008-01-09 | E-MEXP-1391 | biostudies-arrayexpress
TranscriptomicsThe impact of experience-dependent and independent factors on gene expression in songbird brain [e03]
Songbirds provide rich natural models for studying the relationships of brain anatomy, behavioral function, environmental signals and gene expression. Under the Songbird Neurogenomics Initiative, investigators from more than a dozen laboratories collected brain samples from six species of songbird ...
ORGANISM(S): Loxia curvirostra 
2012-05-30 | E-GEOD-36707 | biostudies-arrayexpress
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