Biswas P P - OmicsDI

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Unknown (1203)
Proteomics (34)
Transcriptomics (16)
Metabolomics (4)
Genomics (2)
Other (1)

Organisms

Homo sapiens (38)
Mus musculus (6)
Streptococcus mutans (1)
Lolium perenne (1)
Schizosaccharomyces pombe (1)
Bombyx mori (1)
Escherichia coli (1)
Rattus norvegicus (1)

Repository

pride (32)
biostudies-arrayexpress (18)
MetaboLights (4)
PanoramaPublic (2)
GPMDB (1)

Tissue

Epithelial cell (5)
Brain (4)
Lung (4)
Lymph node (3)
Blood plasma (2)
Cell culture (2)
Blood cell (1)
Cell suspension culture (1)
Dendritic cell (1)
Epithelium of esophagus (1)
Fibroblast (1)
Kidney (1)
Liver (1)
MDA-MB-231 cell (1)
Macrophage (1)
Nasal lavage fluid (1)
Permanent cell line cell (1)
Retina (1)
Synovium (1)
Testis (1)
Urine (1)

Disease

Brain cancer (4)
Lung cancer (2)
Non-small cell lung carcinoma (2)
Not Available (1)
COVID-19 (1)
Chronic myeloid leukemia (1)
Glioblastoma (1)
Rheumatoid arthritis (1)
Tuberculosis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (32)
Shotgun proteomics (17)
Bottom-up proteomics (5)
Mass spectrometry (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SWATH MS (3)
Affinity purification coupled with mass spectrometry proteomics (2)
SRM/MRM (2)
Top-down proteomics (2)
Data-independent acquisition (1)
Gel-based experiment (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
Instrument (1)
6540 Q-TOF LC/MS (Agilent) (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - (1)

Publication Date

2025 (7)
2014 (6)
2022 (6)
2026 (6)
2021 (5)
2010 (4)
2023 (3)
2020 (3)
2019 (3)
2015 (2)
2012 (2)
2013 (1)
2011 (1)
2009 (1)
2006 (1)
2016 (1)
2024 (1)
2017 (1)

CHEBI ID

CHEBI:15929 (3)
CHEBI:10106 (2)
CHEBI:10135 (2)
CHEBI:102216 (2)
CHEBI:111173 (2)
CHEBI:116314 (2)
CHEBI:1217 (2)
CHEBI:134485 (2)
CHEBI:134750 (2)
CHEBI:134758 (2)
CHEBI:134827 (2)
CHEBI:134834 (2)
CHEBI:134894 (2)
CHEBI:134934 (2)
CHEBI:135291 (2)
CHEBI:135566 (2)
CHEBI:135932 (2)
CHEBI:137055 (2)
CHEBI:137125 (2)
CHEBI:137268 (2)
CHEBI:1391 (2)
CHEBI:142245 (2)
CHEBI:142683 (2)
CHEBI:143054 (2)
CHEBI:143870 (2)
CHEBI:1458 (2)
CHEBI:156235 (2)
CHEBI:15746 (2)
CHEBI:15756 (2)
CHEBI:1582 (2)

Metabolite Name

(-)-Octanoylcarnitine (2)
(-)-Rhododendrin (2)
(-)-THREO-SPHINGOSINE (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3R,4S,5S,6R)-2-[(3Z)-hex-3-en-1-yloxy]-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(3S)-3-Amino-2-azepanone (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9E,12E)-9,12-Octadecadienoic acid (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
(Z)-Hex-3-enyl benzoate (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
1-(4-methylphenyl)-3,5-diphenylpent-2-ene-1,5-dione (2)
1-Allyl-2,3,4,5-tetramethoxybenzene (2)
1-Heptanethiol (2)
1-Hexadecanoyl-sn-glycero-3-phosphocholine (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-Monopalmitoylglycerol (2)
1-Oleoyl-rac-glycerol (2)
1-Tetradecylamine (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)

Study type

Transcription profiling by array (14)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (161)
2022 (156)
2024 (141)
2021 (140)
2023 (120)
2020 (116)
2019 (69)
2018 (62)
2017 (50)
2016 (37)
2026 (32)
2014 (26)
2015 (25)
2013 (22)
2012 (20)
2010 (11)
2011 (10)
2009 (7)
2008 (6)
2006 (3)
2004 (3)
2007 (1)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

ICR, Functional Proteomics (2)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
1Thoracic and Gastrointestinal Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA (1)
Assistant Professor Department of Biochemistry Montreal, Quebec H3G 1Y6 (1)
Biosciences and Bioengineering, IIT Bombay, India (1)
CSIR-Institute of Genomics and Integrative Biology (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Complex Analysis Group BRIC-Translational Health Science and Technology Institute Dept of Biotechnology, Govt Of India NCR Biotech Science Cluster, 3rd Milestone, Faridabad–Gurugram Expressway, PO box #04, Faridabad- 121001 (Haryana) (1)
Department of Integrated Immunobiology Duke School of Medicine Durham, NC, USA (1)
Department of Ophthalmology and Visual Science, University of Michigan, Ann Arbor, MI, USA Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI, USA (1)
Dept of pathology, Vision research foundation, Chennai, India (1)
El Bachir Affar, PhD, Professor Department of Medicine, University of Montreal Director of the Cell Signaling and Cancer Research Unit Research Center, Maisonneuve-Rosemont Hospital 5415 Assomption Blvd., Montreal, Quebec, H1T 2M4, CANADA Tel: 514 252-3400 (Ext: 3343) (1)
Functional Proteomics, ICR (1)
Himadri Biswas, Ph. D. Post-doctoral associate, Dept. of Cancer Biology, University of Toledo, Ohio, 43614 (1)
Himadri Biswas, Ph. D. Post-doctoral associate, Dept. of Cancer Biology, University of Toledo, Ohio, 43614, (1)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (1)
IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology,Kolkata, India (1)
Institute for Physiological Chemistry Medizinisch-Theoretisches Zentrum MTZ Technical University Dresden Fiedlerstraße 42 D-01307 Dresden (1)
PI BSBE PROTEOMICS LAB IIT BOMBAY (1)
PROFESSOR, PI, PROTEOMICS LAB, DEPARTMENT OF BIOSCIENCES AND BIOENGINEERING, IIT BOMBAY (1)
PROFESSOR, PRINCIPLE INVESTIGATOR, PROTEOMICS LAB, BSBE, IIT BOMBAY (1)
PROFESSOR, PRINCIPLE INVESTIGATOR, PROTEOMICS LAB, DEPARTMENT OF BIOSCIENCES AND BIOENGINEERING, IIT BOMBAY (1)
Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (1)
Proteomics Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai-400076, India. (1)
Proteomics lab, Indian Institute of Technology (IIT) Bombay (1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Senior Principal Scientist, Cell Biology and Physiology, CSIR-IICB, Jadavpur, Kolkata, India (1)
THORACIC & GI ONCOLOGY BRANCH, NCI, NIH, Bethesda, MD 20892 (1)
Thoracic and Gastrointestinal Oncology Branch, CCR , NCI, NIH (1)
University of Health Sciences Turkey (1)

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Human serine/threonine protein kinase ATR LC-MS/MS

ATR is a PI3K-like kinase protein, regulating checkpoint responses to DNA damage and replication stress. Apart from its checkpoint function in the nucleus, ATR actively engage in antiapoptotic role at mitochondria following DNA damage. The different functions of ATR in the nucleus and cytoplasm are ...

ORGANISM(S): Homo sapiens (Human)

2022-08-12 | PXD031385 | Pride

LC/MS/MS identification of phosphor-sites of Human ATR-domain (330-616 aa) expressed and purified from E. coli after in vitro phosphorylation.

Pin1, a peptidyl-prolyl cis/trans isomerase (PPIase), and PP2A regulate ATRS428P429 isomerization, they act oppositely depending on the phosphorylation status of ATR(S428). In addition, whether the isomerization at the ATR-S428P429 motif along with the BH3 domain accessibility is exclusively respons...

ORGANISM(S): Escherichia coli

2026-09-08 | PXD054542 | Pride

Biotin modification Atr-domain Cis/trans prolyl isomerization Mass protein footprinting Bh3-like domain

Human FKBP5 Negatively Regulates Transcription through Inhibition of P-TEFb Complex Formation.

Not available

S-EPMC8773085 | biostudies-literature

Gliotoxin, identified from a screen of fungal metabolites, disrupts 7SK snRNP, releases P-TEFb, and reverses HIV-1 latency.

Not available

S-EPMC7423394 | biostudies-literature

Positive Regulation of Transcription by Human ZMYND8 through Its Association with P-TEFb Complex.

Not available

S-EPMC6152903 | biostudies-literature

P-glycoprotein silencing with siRNA delivered by DOPE-modified PEI overcomes doxorubicin resistance in breast cancer cells.

Not available

S-EPMC3422569 | biostudies-literature

Technology adaptation in sugarcane supply chain based on a novel p, q Quasirung Orthopair Fuzzy decision making framework.

Not available

S-EPMC11532545 | biostudies-literature

Expression data from fission yeast Schizosaccharomyces pombe under nitrosative stress

Nitric oxide being a versatile molecule inside biological systems, from being both a cell signaling molecule to a potent stress agent, has significant effect in the transcriptional response in fission yeast. We have used fission yeast microarrays to identify cellular targets of Nitric Oxide (NO) and...

ORGANISM(S): Schizosaccharomyces pombe

2015-01-30 | E-GEOD-50899 | biostudies-arrayexpress

Bio-Organic Fertilizer: A Green Technology to Reduce Synthetic N and P Fertilizer for Rice Production.

Not available

S-EPMC8023392 | biostudies-literature

Lipid production and molecular dynamics simulation for regulation of accD gene in cyanobacteria under different N and P regimes.

Not available

S-EPMC5393026 | biostudies-literature

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1260 Results

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