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TranscriptomicsModulation of gene expression in heart and liver of hibernating black bears (Ursus americanus)
We analyzed gene expression in the American black bear, Ursus americanus, using a custom 12,800 cDNA probe (BA02) microarray to detect differences in expression that occur in heart and liver during winter hibernation in comparison to summer active animals. We identified 245 genes in heart and 319 ge...
ORGANISM(S): Ursus americanus 
2011-05-10 | E-GEOD-27875 | biostudies-arrayexpress
TranscriptomicsThe Jejunum Mucosa of Female Black-boned Chickens: Control vs. Heat-stressed Treatment
Transcriptional profiling of the jejunum mucosa with 1.5 fold-change reporter genes in comparing control black-boned chickens under normal temperature (NT) conditon with heat-stress treated black-boned chickens under high temperature (HT) condition. Goal was to determine the differentially expressed...
ORGANISM(S): Gallus gallus 
2015-07-28 | E-GEOD-71352 | biostudies-arrayexpress
TranscriptomicsA cDNA Microarray, UniShrimpChip, for Identification of Genes Relevant to Testicular Development in the Black Tiger Shrimp (Penaeus monodon)
Comparisons of gene expression profiles from testis of wild and domesticated male brooders were made through a cDNA microarray in the black tiger shrimp (Penaeus monodon). Differentially expressed genes were identified through the microarray analysis, and the microarray results were confirmed by rea...
ORGANISM(S): Penaeus monodon 
2012-05-11 | E-GEOD-21890 | biostudies-arrayexpress
TranscriptomicsTimecourse analysis of gene expression by murine bone marrow-generated dendritic cells following treatment with Poly I:C
BACKGROUND: Dendritic cells (DC) play a central role in primary immune responses and become potent stimulators of the adaptive immune response after undergoing the critical process of maturation. Understanding the dynamics of DC maturation would provide key insights into this important process. Time...
ORGANISM(S): Mus musculus 
2010-08-26 | E-GEOD-21033 | biostudies-arrayexpress
TranscriptomicsExtensive transcriptome changes during vegetative bud dormancy in Populus
We investigated differential gene expression patterns in Populus vegetative buds between paradormant, endodormant, and ecodormant dormancy states. Our primary objectives were to (1) identify which individual genes, biological processes, molecular functions, and regulatory pathways were differentiall...
ORGANISM(S): Populus trichocarpa 
2015-06-26 | E-GEOD-70260 | biostudies-arrayexpress
TranscriptomicsEarly transcriptional response to phytopathogen Xanthomonas campestris pv. campestris by susceptible cabbage host
Black rot, caused by Xanthomonas campestris pv. campestris (Xcc) is one of the most devastating diseases of cruciferous crops worldwide. The pathogen infects and multiplies in plant vascular tissues and, as the disease progresses, the veins of infected tissues turn black and characteristic V-shaped ...
ORGANISM(S): Brassica oleracea var. capitata 
2015-05-09 | E-GEOD-68670 | biostudies-arrayexpress
TranscriptomicsH. pylori genotypes and host gene expression profiles
H. pylori virulence factors have been suggested to be important in determining the outcome of infection. The H. pylori adhesion protein BabA2 is thought to play an crucial role in bacterial colonization and in induction of a severe gastric inflammation, particularly in combination with expression of...
ORGANISM(S): Homo sapiens 
2008-05-01 | E-GEOD-6143 | biostudies-arrayexpress
TranscriptomicsVaccination against yersiniosis induces a specific gill transcriptome biosignature in Atlantic salmon
Simple cost-effective bacterins are the earliest and most successfully used commercial vaccines in fish. In particular, those prepared from Yersinia ruckeri have proven effective at controlling Enteric Red Mouth Disease (ERM) and yersiniosis in rainbow trout and Atlantic salmon, respectively. Howeve...
ORGANISM(S): Salmo salar 
2012-07-21 | E-GEOD-36332 | biostudies-arrayexpress
TranscriptomicsEffect of p21 overexpression on skeletal muscle mRNA expression.
For additional details see Bongers et al, Spermine Oxidase Maintains Basal Skeletal Muscle Gene Expression and Fiber Size, and Is Strongly Repressed by Conditions that Cause Skeletal Muscle Atrophy . Am J Physiol Endocrinol Metab. 2014 [under review] Bilateral tibialis anterior muscles of C57BL/6 m...
ORGANISM(S): Mus musculus 
2014-12-04 | E-GEOD-63007 | biostudies-arrayexpress
TranscriptomicsTuberculosis patients, latent and uninfected controls; whole blood
Tuberculosis (TB) still poses a profound burden on global health, owing to significant morbidity and mortality worldwide. Although a fully functional immune system is essential for the control of Mycobacterium tuberculosis infection, the underlying mechanisms and reasons for failure in part of the i...
ORGANISM(S): Homo sapiens 
2010-11-23 | E-GEOD-25534 | biostudies-arrayexpress
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