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TranscriptomicsBRAF-mutation associated DNA methylation in novel CRC cell lines
Background: In vitro models are an essential tool towards understanding the molecular characteristics of colorectal cancer (CRC) and the testing of therapies for CRC. To this end we established 21 novel CRC cell lines of which six were derived from liver metastases. Extensive genetic, genomic, trans...
ORGANISM(S): Homo sapiens 
2016-02-29 | E-GEOD-67772 | biostudies-arrayexpress
TranscriptomicsSNP-array profiling of 21 novel primary and metastatic colorectal cancer cell lines [Illumina HumanExome-12 v1.2 BeadChip]
Background: In vitro models are an essential tool towards understanding the molecular characteristics of colorectal cancer (CRC) and the testing of therapies for CRC. To this end we established 21 novel CRC cell lines of which six were derived from liver metastases. Extensive genetic, genomic, trans...
ORGANISM(S): Homo sapiens 
2016-02-29 | E-GEOD-67774 | biostudies-arrayexpress
TranscriptomicsSNP-array profiling of 21 novel primary and metastatic colorectal cancer cell lines [Illumina HumanExome-12 v1.0 BeadChip]
Background: In vitro models are an essential tool towards understanding the molecular characteristics of colorectal cancer (CRC) and the testing of therapies for CRC. To this end we established 21 novel CRC cell lines of which six were derived from liver metastases. Extensive genetic, genomic, trans...
ORGANISM(S): Homo sapiens 
2016-02-29 | E-GEOD-67773 | biostudies-arrayexpress
TranscriptomicsOmics profiling of 21 novel primary and metastatic colorectal cancer cell lines
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Homo sapiens 
2016-02-29 | E-GEOD-67775 | biostudies-arrayexpress
Genomicseaa4975f-4514-44a7-baa4-9404c42156a2 - samples
Whole genome sequencing dataset of 54 tumor/normal samples of 25 cHCC-ICC cases.
EGAD00001005181 | EGA
Genomics61f6508f-ab66-4d36-ad86-028a0ff97746 - samples
The whole exome sequencing data of 291 tumor/normal samples from 121 cHCC-ICC cases.
EGAD00001005183 | EGA
Genomics77745784-0040-45d2-af14-10f27f05a48d - samples
The RNA-seq data of 97 tumor samples from 77 cHCC-ICC cases, data of two other HCC tumor samples were also included.
EGAD00001005182 | EGA
GenomicsGenomic and transcriptomic profiling of combined hepatocellular and intrahepatic cholangiocarcinoma reveals distinct molecular subtypes
We performed genomic and transcriptomic sequencing of 133 combined hepatocellular and intrahepatic cholangiocarcinoma (cHCC-ICC) cases, including separate, combined, and mixed subtypes.
EGAS00001003093 | EGA
GenomicsPKU_cHCC-ICC DAC
Data Access Committee EGAC00001001273
EGAC00001001273 | EGA
GenomicsWhole-Genome and Epigenomic Landscapes of Etiologically Distinct Subtypes of Cholangiocarcinoma
Cholangiocarcinoma (CCA) is a hepatobiliary malignancy exhibiting high incidence in countries with endemic liver-fluke infection. We analyzed 489 CCAs from 10 countries, combining whole-genome (71 cases), targeted/exome, copy-number, gene expression, and DNA methylation information. Integrative clus...
EGAS00001001653 | EGA
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