Brian - OmicsDI

Show results for

Transcriptomics (728)
Unknown (594)
Proteomics (275)
Genomics (272)
Metabolomics (48)
Genomic (13)
Models (11)
Other (5)
Multiomics (5)

Organisms

Homo sapiens (356)
Mus musculus (287)
Drosophila melanogaster (43)
Saccharomyces cerevisiae (40)
Arabidopsis thaliana (29)
Rattus norvegicus (22)
Schizosaccharomyces pombe (10)
Caenorhabditis elegans (9)
Clostridium botulinum (7)
Mycobacterium tuberculosis (6)
Cryptococcus neoformans (6)
Staphylococcus aureus (5)
Bos taurus (5)
Arabidopsis halleri (5)
synthetic construct (3)
Xenopus laevis (3)
Zea mays (3)
Canis lupus familiaris (3)
Candida albicans (3)
Theileria annulata (2)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Urocitellus parryii (2)
Clostridium botulinum A str. ATCC 3502 (2)
Hippoglossus hippoglossus (2)
Kluyveromyces lactis (2)
Drosophila pseudoobscura (2)
Escherichia coli BW25113 (2)
Malus domestica (2)
Acinetobacter baumannii (1)
Alphainfluenzavirus (1)

Organisms

Mus musculus (48)
Homo sapiens (26)
Arabidopsis thaliana (13)
Alligator mississippiensis (6)
Oncorhynchus mykiss (3)
Picosynechococcus sp. PCC 7002 (3)
Danio rerio (3)
Saccharomyces cerevisiae (3)
Physcomitrium patens (2)
Rattus norvegicus (2)
Spodoptera frugiperda ascovirus 1a (1)
Trichoplusia ni (1)
Arabidopsis halleri (1)
Gambusia affinis (1)
Aspergillus nidulans (1)
Spodoptera frugiperda (1)
Schizosaccharomyces pombe (1)
Macaca fascicularis (1)
Setaria viridis (1)
Apis mellifera (1)
Glycine max (1)
Staphylococcus aureus (1)
marine metagenome (1)
Zea mays (1)
Escherichia coli (1)

Repository

biostudies-arrayexpress (778)
ENA (148)
MassIVE (144)
pride (79)
EGA (58)
GNPS (26)
geo (25)
MetaboLights (22)
PeptideAtlas (16)
dbGaP (13)
PAXDB (13)
BioModels (11)
PanoramaPublic (11)
GPMDB (5)
jPOST (4)
iProX (1)

Tissue

Epithelial cell (8)
Cell culture (7)
Plant cell (5)
Brain (4)
Fibroblast (4)
Heart (4)
Leaf (4)
Skeletal muscle (4)
Blood serum (3)
Liver (3)
Macrophage (3)
Permanent cell line cell (3)
Pollen (3)
Blood (2)
Blood cell (2)
Diaphragm (2)
Lung (2)
Uterine leiomyoma cell (2)
Anther (1)
B cell (1)
Blood plasma (1)
Brown adipose tissue (1)
Cardiac muscle cell (1)
Cardiocyte (1)
Cerebellum (1)
Cerebrospinal fluid (1)
Cytotoxic T-lymphocyte (1)
Extracellular vesicle (1)
Gastrocnemius (1)
Gut juice (1)

Disease

Not Available (5)
Normal (2)
Lung cancer (2)
Colon cancer (2)
Malignant neoplasm of ovary (2)
Oculocutaneous albinism type III (2)
HPV positive (1)
Nondiabetic (1)
Invasive lobular carcinoma (1)
Chronic myelogenous leukemia (1)
Reference (1)
Prostate cancer (1)
SINV infection (1)
Carcinoma (1)
Acute leukemia (1)
Acute myocardial infarction (1)
Alzheimer's disease (1)
Aortic aneurysm (1)
B-cell acute lymphoblastic leukemia (1)
Breast cancer (1)
Cervix carcinoma (1)
Childhood medulloblastoma (1)
Chronic kidney disease (1)
Disease (1)
Disease free (1)
Emphysema (1)
Endometrial cancer (1)
Heart failure (1)
Influenza (1)
Iron deficiency anemia (1)

Technology Type

Mass Spectrometry (79)
Shotgun proteomics (47)
Mass spectrometry (19)
Bottom-up proteomics (11)
Data-dependent acquisition (8)
Data-independent acquisition (6)
Gel-based experiment (5)
Affinity purification coupled with mass spectrometry proteomics (4)
All-ion fragmentation (4)
Mass spectrometry assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
SWATH MS (2)
Top-down proteomics (2)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA, Affymetrix GeneChip Scanner 3000 7g (1)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq (1)
Illumina HiSeq 2500, Illumina MiSeq (1)
Illumina HumanHap 550K, Illumina HumanHap300-Duo (1)
NMR spectroscopy (1)
Affinity proteomics (1)
MSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Q Exactive (43)
Q Exactive HF (35)
Illumina NovaSeq 6000 (9)
Illumina NovaSeq X (6)
Illumina HiSeq 2000 (5)
Autoflex (5)
Illumina HiSeq 2500 (4)
Illumina Genome Analyzer (3)
Illumina Genome Analyzer II (2)
Q Exactive UHMR (2)
Synapt XS (2)
Thermo Fisher Scientific (MA, USA) Q Exactive hybrid quadrupole-orbitrap mass spectrometer (2)
Bruker micrOTOF-Q III (2)
Chromium Controller / Agilent Bioanalyzer (1)
Chromium™ Next GEM Single Cell 3′ Kit v3.1 (10X Genomics, PN-1000269) (1)
Chromium Controller (1)
Ilumina HiScan H166 (1)
Axon Instruments GenePix 4000B scanner (1)
None (1)
Illumina iScan (1)
Affymetrix GeneChip(R) HT Scanner (1)
Affymetrix GeneChip Scanner 3000 7G (1)
GenePix 4000B [Axon Instruments] (1)
Axon GenePix 4000B scanning hardware (1)
Ion Torrent PGM (1)
N/A (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Autoflex Speed LRF MALDI-TOF (Bruker Daltonics) (1)

Publication Date

2013 (116)
2010 (101)
2014 (99)
2015 (99)
2012 (94)
2011 (84)
2016 (66)
2008 (60)
2024 (40)
2021 (39)
2022 (38)
2020 (34)
2009 (34)
2019 (32)
2023 (30)
2007 (28)
2025 (26)
2017 (23)
2018 (18)
2026 (17)
2006 (12)
2005 (11)
2004 (2)

UNIPROT ID/AC

1433E_MOUSE (7)
2AAA_MOUSE (7)
3HIDH_MOUSE (7)
6PGL_MOUSE (7)
A1AT1_MOUSE (7)
AATC_MOUSE (7)
AATM_MOUSE (7)
ABCD3_MOUSE (7)
ACBP_MOUSE (7)
ACINU_MOUSE (7)
ACL6A_MOUSE (7)
ACON_MOUSE (7)
ACOX1_MOUSE (7)
ACTA_MOUSE (7)
O18660 (1)
O61735 (1)
P03962 (1)
P04049 (1)
P07259 (1)
P07663 (1)
P13298 (1)
P15700 (1)
P20051 (1)
P27361 (1)
P28272 (1)
P28274 (1)
P30402 (1)
P36010 (1)
Q02750 (1)
Q9TVS7 (1)

ENSEMBL ID

ENSMUSG00000027651 (1)
ENSMUSG00000072849 (1)
ENSMUSP00000141097 (1)

CHEBI ID

CHEBI:15428 (11)
CHEBI:16919 (11)
CHEBI:17368 (11)
CHEBI:15354 (10)
CHEBI:16610 (10)
CHEBI:16704 (10)
CHEBI:16708 (10)
CHEBI:15891 (9)
CHEBI:16199 (9)
CHEBI:16449 (9)
CHEBI:16737 (9)
CHEBI:17084 (9)
CHEBI:17562 (9)
CHEBI:17568 (9)
CHEBI:17596 (9)
CHEBI:17822 (9)
CHEBI:18132 (9)
CHEBI:27897 (9)
CHEBI:28300 (9)
CHEBI:29016 (9)
CHEBI:15713 (1)
CHEBI:15842 (1)
CHEBI:15859 (1)
CHEBI:16695 (1)
CHEBI:16742 (1)
CHEBI:17025 (1)
CHEBI:17659 (1)
CHEBI:17672 (1)
CHEBI:17677 (1)
CHEBI:33282 (1)

Metabolite Name

Spermidine (10)
2-hydroxyglutarate (9)
Glycine (9)
Alpha-ketoglutarate (8)
Arginine (8)
Cysteine (8)
Fructose (8)
Fumarate (8)
Glutamine (8)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (7)
1-palmitoyl-GPE (16:0) (7)
5-oxoproline (7)
Adenine (7)
Alanine (7)
Asparagine (7)
Aspartate (7)
Carnitine (7)
Cholesterol (7)
Choline (7)
Citrate (7)
Citrulline (7)
Creatine (7)
Cystathionine (7)
Cysteinylglycine (7)
Cytidine (7)
Deoxycarnitine (7)
Gamma-glutamylglutamate (7)
Glucose (7)
Glutamate (7)
Glycerol 3-phosphate (7)

First Public Date

2014 (22)
2018 (18)
2021 (16)
2024 (15)
2020 (13)
2026 (10)
2023 (10)
2022 (10)
2025 (8)
2019 (8)
2016 (5)
2013 (5)
2017 (4)
2015 (4)

Modelling Approach

Ordinary differential equation model (9)
Computational model (1)
Delayed differential equation model (1)

Lab affiliation

Department of Biological Sciences at Macquarie University (3)
Physiology, NUI Galway (3)
Chemistry and Biochemistry Department, Montana State University, Bozeman, MT 59717 (2)
IRIC-Université de Montréal (2)
Pediatric, Developmental & Genetic Ophthalmology Section AND Ophthalmis Clinical Genetics Section, Ophthalmic Genetics and Visual Function Branch, National Eye Institute Intramural Research Program, NIH, US Government (2)
The Rockefeller University (2)
, Scripps Institution of Oceanography, University of California at San Diego, La Jolla, CA 92093-0202 (1)
Associate Professor Department of Physiology Medical College of Wisconsin (1)
Attending Physician Medical Director, Brain Tumor Institute Principal Investigator, Center for Cancer and Immunology Research, Children Research Institute Associate Professor of Pediatrics - The George Washington University School of Medicine and Health Sciences Executive co-Chair, Childrens Brain Tumor Network www.CBTN.org (1)
Biomedical Informatics, The Ohio State University, United States (1)
California State University Long Beach (1)
Cancer Research UK Manchester Institute Systems Oncology (1)
Center for Cancer and Immunology Research, Children’s Research Institute, Children’s National Health System (1)
Chair of the LU Hemp Institute and an Assistant Professor of Molecular Biology and Genomics at Lincoln University in Missouri. (1)
Chuna Choudahry University of Copenhagen Center for Protein Research Blegdamsvej 3B, 6.1 DK-2200 Copenhagen N Denmark (1)
City University of New York Advanced Science Research Center - Nanoscience Department, USA City University of New York Hunter College -Chemistry & Biochemistry Department, USA (1)
Curators’ Distinguished Professor of Animal Sciences and Obstetrics, Gynecology and Women’s Health, University of Missouri, Columbia (1)
Department of Biochemistry and Biophysics, RNA Discovery Center, and Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill (1)
Department of Biochemisty, The University of Western Ontario, London,Canada (1)
Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark (1)
Department of Chemisry & Biochemistry at Montanan State University, Bozeman, MT (1)
Department of Chemistry and Biocheimstry at The Ohio State University; Comprehensive Cancer Center, The Ohio State University (1)
Department of Chemistry and Biochemistry Montana State University (1)
Department of Child Health and Child Health Research Institute, School of Medicine, University of Missouri, Columbia, MO, United States (1)
Department of Haematology, Cambridge Stem Cell Institute, Cambridge, UK Cambridge University Hospitals, Cambridge, UK (1)
Department of Microbiology University of Illinois B103 CLSL 601 S Goodwin Ave Urbana, IL 61801 (1)
Department of Microbiology and Immunology and Biomedical Instrumentation Center, Uniformed Services University of the Health Sciences, Bethesda, Maryland, 20814 (1)
Department of Musculoskeletal Biology, University of Liverpool (1)
Department of Obstetrics and Gynecology, Inova Fairfax Medical Campus, Inova Health System (1)
Department of Plant Pathology, University of Georgia, Athens, Georgia, USA (1)