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ProteomicsGlobal population analysis of HLA class I affinity toward proteasome-generated peptides from five main SARS-CoV-2 spike protein RBD variants
Here we report binding index of 305 human HLA class I molecules from 18,771 unique haplotypes of 28,104 individuals to the 821 peptides experimentally observed from spike protein receptor-binding domain (RBD) of 5 main SARS-CoV-2 strains hydrolysed by human proteasomes with constitutive and immuno c...
ORGANISM(S): Homo sapiens (Human) Severe acute respiratory syndrome coronavirus 2 
2025-01-29 | PXD050265 | Pride
Sars-cov-2  proteasome  immunoproteasome  hla class i  ifnγ 
ProteomicsThe Physcomitrella patens chloroplast proteome changes in response to short-term stress
Plants often face more than one type of stress at a time, and how plants respond to combined stress factors is therefore of great interest. Here, we used protoplasts of the moss Physcomitrella patens as a model to study the effects of short-term combined stress on the chloroplast proteome. In this s...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2016-12-23 | PXD005017 | Pride
Protoplast Moss Physcomitrella patens Chloroplast 
ProteomicsProteome profiling of Mycoplasma gallisepticum under heat stress
Mycoplasma gallisepticum proteome reponse under heat stress was studied. Heat stress has been shown previously to induce the most widespread and at the same time the most intense response at transcription level among the panel of several stresses. Here the corresponding proteome response was charact...
ORGANISM(S): Mycoplasma gallisepticum S6 
2017-11-15 | PXD008198 | Pride
Lc-msms Heat shock Dia Swath Data-independent acquisition Heat stress Mycoplasma gallisepticum 
ProteomicsProteogenomic annotation of T6SS components identified in Bacteroides fragilis secretome
Bacteroides fragilis (Bf)'s T6SS locus has been characterized and shown to have functional activity in competition experiments. It has been demonstrated that symbiont nontoxigenic Bf strains have a more effective “weapon” effect on pathogenic Bf, which is realized through the activity of effector-im...
ORGANISM(S): Bacteroides fragilis 
2025-01-31 | PXD059123 | Pride
Sds‒page Tripletof 5600 Bacteroides fragilis Vesicles 
ProteomicsBlood plasma and serum samples of healthy donors fractionated on different chromatography sorbents
Blood as connective tissue potentially contain evidence of all processes occurring within the organism, at least in trace amounts. Because of their small size, peptides overcome cell membranes and epithelial barriers more freely than proteins. Among the peptides found in blood, there are both fragme...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-11-15 | MSV000081717 | MassIVE
OtherProteome-metabolome profiling of ovarian cancer ascites reveals novel components involved in intercellular communication.
Data from ProteomeXchange, PXD ID: PXD001403. File: V022-V023+V053_line8_MGFPeaklist.mgf. Published as part of Mol Cell Proteomics. 2014 Sep 30 . From the Abstract: {{i}} The aim of this study was to elucidate specific features of malignant ascites metabolome and proteome. To omit components that b...
ORGANISM(S): Homo_sapiens_viruses, Human 
GPM11210030783 | GPMDB
Resource Reanalysis 
ProteomicsProteome profiling of ovarian cancer and cirrhosis ascites
Proteome-metabolome profiling of ovarian cancer ascites reveals novel components involved in intercellular communication http://www.mcponline.org/content/early/2014/09/30/mcp.M114.041194.full.pdf+html?sid=78e7a955-fa54-4ded-b296-89f1fb6adbec
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-07-19 | MSV000079934 | MassIVE
ProteomicsProteome profiling of microvesicles, exosomes and supernatant from SKOV3
Proteome-metabolome profiling of ovarian cancer ascites reveals novel components involved in intercellular communication http://www.mcponline.org/content/early/2014/09/30/mcp.M114.041194.full.pdf+html?sid=78e7a955-fa54-4ded-b296-89f1fb6adbec
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-07-22 | MSV000079992 | MassIVE
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