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TranscriptomicsMetagenomic, metatranscriptomic and metaproteomic study of enrichment culture of M. oxyfera (denitrifying methanotroph)
DNA, RNA and protein were extracted from the culture and subjected to massive parallel sequencing and nano-LC-MS-MS respectively Combination of these methods enabled the reconstruction of the complete genome sequence of M oxyfera from the metagenome and identification of the functionally relevant en...
ORGANISM(S): Candidatus Methylomirabilis oxyfera 
2010-03-25 | E-GEOD-18535 | biostudies-arrayexpress
TranscriptomicsDeep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection
Salmonella enterica serovar Typhimurium (S. typhimurium) bacteria cause an inflammatory and lethal infection in zebrafish embryos. To characterize the embryonic innate host response at the transcriptome level, we have extended and validated previous microarray data by Illumina next-generation sequen...
ORGANISM(S): Danio rerio 
2010-10-25 | E-GEOD-22472 | biostudies-arrayexpress
UnknownPatient-reported ability to walk 4 m and to wash: New clinical endpoints and predictors of survival in patients with pre-terminal cancer.
Not available
S-EPMC10401535 | biostudies-literature
ProteomicsGel LC-MS/MS analyses of MMP cleavage of tryptophanyl-tRNA synthetase
Tryptophanyl-tRNA synthetase was incubated by MMPs, cleavage products were resolved on SDS-PAGE. Cleavage products were trypsin digested and analyzed by LC-MS/MS.
ORGANISM(S): Homo sapiens (Human) 
2019-05-29 | PXD013217 | Pride
Mmp Protease Lc-ms/ms 
UnknownMetabolite Variation between Nematode and Bacterial Seed Galls in Comparison to Healthy Seeds of Ryegrass Using Direct Immersion Solid-Phase Microextraction (DI-SPME) Coupled with GC-MS.
Not available
S-EPMC9864257 | biostudies-literature
UnknownSequence-dependent attack on peptides by photoactivated platinum anticancer complexes.
Not available
S-EPMC5911824 | biostudies-literature
ProteomicsLC-MS/MS analyses of MMP cleavage fragments of tyrosyl-tRNA synthetase
Tyrosyl-tRNA synthetase was digested with MMPs after which cleavage fragments were resolved using SDS-PAGE. Major bands were digested with trypsin and analyzed by LC-MS/MS.
ORGANISM(S): Homo sapiens (Human) 
2019-05-30 | PXD013197 | Pride
Mmp Protease Lc-ms/ms 
ProteomicsProteins, possibly human, found in World War II concentration camp artifact
Museums displaying artifacts of the human struggle against oppression are often caught in their own internal struggle between presenting factual and unbiased descriptions of their collections, or relying on testament of survivors. Often this quandary is resolved in favor of what can be verified, not...
ORGANISM(S): Mammalia 
2022-08-12 | PXD035267 | Pride
Species Bone Cremains 
UnknownObservation of cardiogenic flow oscillations in healthy subjects with hyperpolarized 3He MRI.
Not available
S-EPMC4628994 | biostudies-literature
UnknownMulticenter Study Demonstrates Standardization Requirements for Mold Identification by MALDI-TOF MS.
Not available
S-EPMC6764242 | biostudies-literature
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