C. elegans development

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Caenorhabditis elegans (1112)
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Staphylococcus aureus subsp. aureus str. Newman (1)

Organisms

Caenorhabditis elegans (343)
Mus musculus (8)
Homo sapiens (5)
Ascaris suum (3)
Drosophila melanogaster (3)
Arabidopsis thaliana (3)
Brugia malayi (2)
Caenorhabditis briggsae (2)
Danio rerio (2)
Heterorhabditis indica (1)
Aplysia californica (1)
Romanomermis culicivorax (1)
Caenorhabditis japonica (1)
Pristionchus pacificus (1)
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Repository

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geo (351)
pride (54)
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Tissue

Whole body (26)
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Animal (1)
Brain (1)
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Liver (1)
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Disease

Not infected (2)
Normal (2)
Parasitic helminthiasis infectious disease (2)
Heterodera schachtii nematode infection (1)
Not Available (1)
Brain cancer (1)
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Bottom-up proteomics (9)
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SWATH MS (2)
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Mass spectrometry assay (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Illumina NovaSeq 6000 (6)
Illumina HiSeq 2000 (6)
NextSeq 500 (6)
LTQ Orbitrap (6)
Illumina HiSeq 2500 (5)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina HiSeq 4000 (4)
Orbitrap Fusion Lumos (4)
Agilent high resolution C scanner (3)
Maxwell 16 Instrument (3)
High resolution C. scanner (2)
Agilent High resolution C scanner (2)
ScanArray 4000XL [PerkinElmer] (2)
Illumina Genome Analyzer II (2)
Illumina NovaSeq X (2)
Q Exactive (2)
Q Exactive HF (2)
Orbitrap Exploris 480 (2)
Liquid Chromatography MS - negative - direct infusion (2)
Maxwell® 16 AS2000 (1)
Agilent scanner G2505B (1)
Illumina Genome Analyzer IIx (1)
- (1)
DNBSEQ-T7 (1)
MinION (1)
Illumina HiSeq 1500 (1)
Instrument (1)
LTQ Orbitrap Velos (1)
Q Exactive Plus (1)

Publication Date

2013 (289)
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2011 (141)
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2015 (47)
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2009 (36)
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2008 (35)
2023 (33)
2019 (28)
2018 (26)
2026 (23)
2017 (21)
2007 (14)
2005 (13)
2006 (8)
2004 (3)
2003 (1)

UNIPROT ID/AC

Q21217 (1)
Q0PDK5 (1)
F5GU77 (1)
O02092 (1)
Q8MXT1 (1)
B6VQ90 (1)
B0M0N9 (1)
H2L2H2 (1)
B0M0P0 (1)
H2L2H3 (1)
Q19013 (1)
Q93650 (1)
P30645 (1)
Q27483 (1)
Q22797 (1)
P54002 (1)
Q23323 (1)
G8JY39 (1)
Q22949 (1)
O17731 (1)
Q22100 (1)
Q9XUY5 (1)
Q21625 (1)
G8JYF6 (1)
Q9N2V9 (1)
A0FLQ6 (1)
Q22494 (1)
P91266 (1)
Q10578 (1)
Q9N5A0 (1)

CHEBI ID

CHEBI:16750 (4)
CHEBI:16610 (4)
CHEBI:17015 (4)
CHEBI:17596 (4)
CHEBI:29042 (3)
CHEBI:17431 (3)
CHEBI:30805 (3)
CHEBI:18066 (3)
CHEBI:16450 (3)
CHEBI:16680 (3)
CHEBI:16927 (3)
CHEBI:16040 (3)
CHEBI:15753 (3)
CHEBI:18257 (3)
CHEBI:17562 (3)
CHEBI:48950 (3)
CHEBI:17515 (3)
CHEBI:16988 (3)
CHEBI:28842 (3)
CHEBI:17148 (3)
CHEBI:17821 (3)
CHEBI:17154 (3)
CHEBI:15727 (3)
CHEBI:17196 (3)
CHEBI:16196 (3)
CHEBI:16393 (3)
CHEBI:35697 (3)
CHEBI:35581 (3)
CHEBI:16335 (3)
CHEBI:17568 (3)

Metabolite Name

CMP (4)
Putrescine (4)
Ornithine (4)
Indole (4)
Spermidine (4)
Cytosine (4)
Agmatine (3)
IMP (3)
AMP (3)
Uracil (3)
Thymine (3)
Sphingosine (3)
Saccharopine (3)
Pyroglutamic acid (3)
N6-Acetyl-L-lysine (3)
Deoxyuridine (3)
Carnosine (3)
GMP (3)
Ergothioneine (3)
L-Arginine (3)
L-Asparagine (3)
UMP (3)
L-Histidine (3)
Taurine (3)
Phenylacetylglycine (3)
Aminoadipic acid (3)
Dodecanoic acid (3)
Sucrose (3)
L-Leucine (3)
L-Phenylalanine (3)

First Public Date

2014 (63)
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2021 (34)
2023 (33)
2020 (32)
2018 (31)
2013 (28)
2026 (27)
2022 (25)
2019 (21)
2017 (21)
2016 (20)
2015 (10)

Modelling Approach

Other (1)

Lab affiliation

Research Group Leader, Friedrich Miescher Institute for Biomedical Research (2)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (2)
University of Wyoming (2)
Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, 97074 Würzburg, Germany (1)
Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), Ole Maaløes Vej 5, 2200 Copenhagen, Denmark (1)
CECAD Institut - University of Cologne Joseph-Stelzmann-Strasse 26 50931 Cologne Germany (1)
CECAD Research Center Institute for Genome Stability in Aging and Disease University of Cologne (1)
Center for Theragnosis, Korea Institute of Science and Technology, Republic of Korea (1)
Central European Institute of Technology, Masaryk University, Brno, Czech Republic National Centre for Biomolecular research, Masaryk University, Brno, Czech Republic (1)
Centre for Gene Regulation and Expression (1)
Department of Biological Sciences, Indian Institute of Science Education and Research (IISER) Mohali, Sector 81, 140306 Punjab, India (1)
Department of Biological Sciences, University of Southern California, Los Angeles CA (1)
Department of Biosciences University of Oslo (1)
Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, USA Morgridge Institute for Research, Madison, WI, USA National Center for Quantitative Biology of Complex Systems, Madison, WI, USA Center for Genomic Science Innovation, University of Wisconsin-Madison, Madison, WI, USA (1)
Department of Developmental and Cell Biology Charlie Dunlop School of Biological Sciences University of California Irvine Irvine CA 92697 United States (1)
Department of Gene Expression, Faculty of Biology, Adam Mickiewicz University in Poznan, Poznan, Poland (1)
Department of Genetics, Cell Biology, and Development, University of Minnesota, 4-208 MCB, 420 Washington Avenue SE, Minneapolis, MN 55455. Tel: 612-624-3955; FAX: 612-626-6140. (1)
Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309-0347 USA (1)
Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Science, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Science, The University of Melbourne, Victoria, Australia (1)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
Department of Veterinary Biosciences, The University of Melbourne (1)
EDyP (1)
Head of the Mass Spectrometry facility of the Institut Curie (LSMP) (1)
Hematology Laboratories, BIOCEV; 1st Faculty of Medicine; Charles University; Vestec, Czech Republic (1)
Institut de recherches cliniques de Montréal (IRCM), Montréal, QC, H2W 1R7, Canada Integrated Program in Neuroscience, McGill University, Montréal, QC, H3A 2B4, Canada Division of Experimental Medicine, McGill University, Montréal, QC, H3A 2B2, Canada Department of Anatomy and Cell Biology, McGill University, Montréal, QC, H3A 0C7, Canada (1)
Institute for Experimental Medicine, Kiel University, Kiel, Germany (1)
Institute for Genome Stability in Ageing and Disease, Medical Faculty, University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany Cologne Excellence Cluster for Cellular Stress Responses in Ageing-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany (1)
Institute of Molecular Biology (IMB) (1)
Institute of Molecular Biology (IMB0 (1)

IsPrivate

False (1)

Classification

helminths (5)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
N6 (1)

Study type

ChIP-seq (361)
Transcription profiling by array (179)
ChIP-chip by tiling array (151)
RNA-seq of coding RNA (95)
Transcription profiling by tiling array (52)
RNA-seq of non coding RNA (40)
Unknown experiment type (14)
Other (10)
Methylation profiling by high throughput sequencing (3)
Animal - Two-color microarray (2)
Animal - High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
Plant - One-color microarray (1)
ChIP-chip by array (1)
CLIP-seq (1)
RIP-seq (1)
Single nucleus RNA sequencing (1)
RNA-seq of total RNA (1)

Release Date

2013 (367)
2010 (252)
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2011 (188)
2012 (184)
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2014 (153)
2019 (149)
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2018 (124)
2009 (92)
2008 (88)
2007 (48)
2006 (38)
2005 (32)
2026 (26)
2000 (18)
2004 (14)
2003 (14)
2002 (12)
1999 (12)
2001 (11)
1998 (10)
1997 (6)

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Phosphate-independent small RNA sequencing of WT and mir-249 mutant C. elegans

MicroRNAs (miRNA), discovered in C. elegans, are short non-coding RNAs that bind and regulate the expression of target mRNAs in animals and plants. C. elegans miRNAs bind to partially complementary sequences in the 3' UTR of the target mRNA, which results in translational repression through mRNA des...

ORGANISM(S): Caenorhabditis elegans

2013-08-08 | E-GEOD-41900 | biostudies-arrayexpress

Conservation of mRNA and protein expression during development of C. elegans

Spatiotemporal control of gene expression is crucial for development and subject to evolutionary changes. Although proteins are the final product of most genes, the developmental proteome of an animal has not yet been comprehensively defined, and the correlation between RNA and protein abundance dur...

ORGANISM(S): Caenorhabditis elegans

2014-01-23 | E-GEOD-53359 | biostudies-arrayexpress

Changes in expression of microRNAs during C. elegans development

Recent work has shown that small non-coding RNAs, including miRNAs, serve an important role in controlling gene expression during development and disease. However, little detailed information exists concerning the relative expression patterns of small RNAs during development of C. elegans. Here we u...

ORGANISM(S): Caenorhabditis elegans

2008-12-01 | E-GEOD-13339 | biostudies-arrayexpress

Deep sequencing of small RNAs from C. elegans during aging

Aging is under genetic control in C. elegans but the mechanisms of lifespan regulation are not completely known. MicroRNAs (miRNAs) regulate various aspects of development and metabolism and one miRNA has been previously implicated in lifespan. Here we show that multiple miRNAs change expression in ...

ORGANISM(S): Caenorhabditis elegans

2011-01-01 | E-GEOD-24510 | biostudies-arrayexpress

DNA accessibility profile of three C. elegans tissues during development

We show there is minimal genome-wide chromatin rearrangements (as measured by DNA accessibility) during tissue differentiation in C. elegans transgenic expression of E. coli DAM (DNA Adenine Methyltransferase) from tissue-specific promoters followed by mapping of methylated sites using a procedure t...

ORGANISM(S): Caenorhabditis elegans

2011-04-16 | E-GEOD-23042 | biostudies-arrayexpress

RNA-seq analysis of C. elegans mina-1 mutants

Comparative transcriptomics study between C. elegans wild-type N2 and mina-1 mutants.

ORGANISM(S): Caenorhabditis elegans

2019-02-13 | E-MTAB-7389 | biostudies-arrayexpress

Proteomic characterisation of Caenorhabditis elegans larval development

The nematode Caenorhabditis elegans (C. elegans) is often used as a model organism to study cell and developmental biology. Quantitative mass spectrometry has only recently been performed in C. elegans and, so far, most studies have been done on adult worm samples. Here we use quantitative mass spec...

ORGANISM(S): Caenorhabditis elegans

2017-12-04 | PXD006676 | Pride

RNA-seq analysis of C. elegans CPEB homolog mutants.

Comparative transcriptomics study between C. elegans wild-type N2 and CPEB homolog mutants: fog-1, cpb-2, and cpb-3.

ORGANISM(S): Caenorhabditis elegans

2017-08-03 | E-MTAB-4720 | biostudies-arrayexpress

Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RIP-Seq)

We present a basic characterization of the function of Y-box binding proteins (YBPs) in C. elegans. YBPs in other organisms are known RNA-binding proteins. Our global analysis of associated mRNAs supports a role of YBPs as general mRNA binders in C.elegans. FLAG IPs were performed on transgenic anim...

ORGANISM(S): Caenorhabditis elegans

2015-01-08 | E-GEOD-62856 | biostudies-arrayexpress

microRNA-mediated translation repression through GYF-1 and IFE-4 in C. elegans development

Proteomic mass spectrometry was used to identify interactors of the miRNRA-Induced Silencing Complex in C. elegans.

ORGANISM(S): Caenorhabditis elegans

2021-09-10 | PXD023610 | Pride

4ehp C. elegans Microrna Translation repression

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