Carbon and nitrogen starvation

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Unknown (190)
Transcriptomics (116)
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Saccharomyces cerevisiae (18)
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Organisms

Saccharomyces cerevisiae (6)
Lactococcus lactis (4)
Neurospora crassa OR74A (3)
Oryza sativa (3)
Chlamydomonas reinhardtii (2)
Synechocystis sp. PCC 6803 (2)
Candida albicans (2)
Phaeodactylum tricornutum (2)
Zea mays (2)
phototrophic enrichment culture UCC-O (1)
Rhizobium phaseoli Ch24-10 (1)
Ettlia oleoabundans (1)
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Pseudozyma hubeiensis (1)
Candida albicans SC5314 (1)
Corynebacterium glutamicum ATCC 13032 (1)
Bifidobacterium breve UCC2003 (1)
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Arabidopsis thaliana (1)
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biostudies-arrayexpress (84)
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geo (37)
pride (26)
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Mass Spectrometry (26)
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CHEBI ID

CHEBI:15940 (2)
CHEBI:18012 (2)
CHEBI:28044 (2)
CHEBI:17242 (2)
CHEBI:91064 (1)
CHEBI:91068 (1)
CHEBI:91067 (1)
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CHEBI:71738 (1)
CHEBI:91055 (1)
CHEBI:74241 (1)
CHEBI:72077 (1)
CHEBI:72075 (1)
CHEBI:72084 (1)

Metabolite Name

DG 40:10 (IS) (1)
DG 40:8 (IS) (1)
DG 40:4 (IS) (1)
DG 40:0 (IS) (1)
DG 38:0 (IS) (1)
DG 34:0 (IS) (1)
DG 32:0 (IS) (1)
DG 30:0 (IS) (1)
DG 28:0 (IS) (1)
DG 34:5 (1)
PS(18:0/16:1) (1)
PS(16:0/22:5) (1)
PS(16:0/16:1) (1)
PG(16:0/20:0) (1)
PE(18:1/22:5) (1)
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PE(16:1/20:1) (1)
PE(16:1/16:1) (1)
PE(14:0/18:1) (1)
PE(14:0/16:1) (1)
PC(18:1/22:5) (1)
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PC(16:1/20:4) (1)
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PC(16:0/20:1) (1)

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Classification

fungi (5)
bacteria (3)

Study type

Transcription profiling by array (57)
RNA-seq of coding RNA (16)
Unknown experiment type (4)
Transcription profiling by tiling array (2)
Transcription profiling by SAGE (1)
ChIP-chip by array (1)
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1999 (1)

Lab affiliation

School of Biological Sciences, Victoria University of Wellington, New Zealand (2)
Biology department, Washington Univeristy in St. Louis (1)
Biomedical Center Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried (1)
Biozentrum, University of Basel, 4056 Basel, Switzerland (1)
Centre Algatech, Institute of Microbiology, Academy of Sciences of the Czech Republic, 6 Novohradská 237, Třeboň, 379 81, Czech Republic (1)
Departamento de Bioquímica e Biologia Molecular, UFPR, Curitiba, PR, Brazil (1)
Department of Bioengineering, Stanford University, Stanford, CA 94305, USA Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA Chan Zuckerberg Biohub, San Francisco, CA 94158 (1)
Department of Biology New York University New York NY (1)
Department of Infectious Disease, Imperial College London (1)
Department of Plant Physiology, Faculty of Biology, Adam Mickiewicz University, Poznań, Poland (1)
EDyP (1)
Genetics and Experimental Bioinformatics, Faculty of Biology, Freiburg University, D-79104 Freiburg, Germany (1)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (1)
Gregor Mendel Institute, Austrian Academy of Sciences, Vienna BioCenter, Vienna, Austria. (1)
Helmholtz Centre for Environmental Research GmbH - UFDZDepartment of Molecular Systems Biology Permoserstraße 15 04318 Leipzig, Germany (1)
Institute of Biochemistry and Biophysics, PAS Pawinskiego 5a, 02-106 Warsaw (1)
Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-US Avda Americo Vespucio 49, 41092-Sevilla, Spain (1)
MPL/BMFZ, HHU Duesseldorf (1)
Molecular Microbiology Division, School of Life Sciences, University of Dundee (1)
Northwest A&F University, Yangling, Shaanxi, China (1)
Prof. Dr. Boris Macek Proteome Center Tuebingen Interfaculty Institute for Cell Biology University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany Phone: +49/(0)7071/29-70556 Fax: +49/(0)7071/29-5779 Web: http://www.pct.uni-tuebingen.de/ (1)
Professor for Analytical Chemistry Institute of Chemical Technologies and Analytics TU Wien Getreidemarkt 9/E164 A-1060 Vienna Austria Associate Professor for Biochemistry Diagnostic and Research Institute of Pathology Medical University of Graz Stiftingtalstrasse 24 A-8010 Graz Austria (1)
Quantitative proteomics University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (1)
University of Dundee, School of Life Sciences, Molecular Microbiology Division (1)
Woods Hole Oceanographic Institution, Woods Hole, MA 02543 USA (1)

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Response of Lactococcus lactis to isoleucine starvation

For the first time in Lactococcus lactis, amino acid starvation response was characterized. The natural imposition of isoleucine starvation, by its consumption during growth, associated to transcript profiling, allowed defining exhaustively this stress stimulon. It consisted of a general induction o...

ORGANISM(S): Lactococcus lactis

2010-06-25 | E-GEOD-4872 | biostudies-arrayexpress

Transposon insertion sequencing (Tn-Seq) to identify fitness determinants during nitrogen starvation, carbon starvation, and transitions between them in Pseudomonas aeruginosa

We performed Tn-Seq to identify genetic fitness determinants for starvation survival in Pseudomonas aeruginosa. A pooled mutant library of approximately 180,000 randomly inserted transposon mutants was grown into stationary phase in rich medium (lysogeny broth) and an aliquot of this mutant pool was...

ORGANISM(S): Pseudomonas aeruginosa

2026-03-04 | E-MTAB-15727 | biostudies-arrayexpress

Transcriptional responses of Saccharomyces cerevisiae to carbon and nitrogen deprivation

Metabolite concentrations can regulate gene expression, which can in turn regulate metabolic activity. The extent to which functionally related transcripts and metabolites show similar patterns of concentration changes, however, remains unestablished. We have therefore measured and analyzed the met...

ORGANISM(S): Saccharomyces cerevisiae

2009-02-01 | E-GEOD-11754 | biostudies-arrayexpress

nitrogen starvation -New developments towards a genetic and diagnosis use of plant mircoarrays

gnp06-01_agriarray - nitrogen starvation - Several factors affect today a more extended use of microarrays for research and as a diagnosis tool. These factors are the experimental cost, the reproducibility of the measurements and the format of the analyses. This project aims at bringing solutions i...

ORGANISM(S): Arabidopsis thaliana

2011-12-08 | E-GEOD-29103 | biostudies-arrayexpress

Lactococcus lactis response to isoleucine starvation

Amino acid assimilation and metabolism are crucial for bacterial growth and survival and this is particularly obvious for lactic acid bacteria (LAB) that are generally auxotroph for various amino acids. However, amino acid assimilation is poorly characterized and a complete description of the respon...

ORGANISM(S): Lactococcus lactis

2011-09-21 | E-GEOD-12962 | biostudies-arrayexpress

Aspergillus niger exposed to combinations of carbon source, nitrogen source, nitrogen concentration, and culture pH

Microarray analysis of Aspergillus niger under conditions with differing combinations of carbon source, nitrogen source, nitrogen concentration, and culture pH Fermentor cultures were grown in minimal medium (MM) at a constant temperature of 30 ± 0.5 ºC and with differing combinations of carbon sour...

ORGANISM(S): Aspergillus niger

2010-04-08 | E-GEOD-17329 | biostudies-arrayexpress

Pseudomonas pseudoalcaligenes CECT5344 response to cyanide vs. ammonium or nitrogen starvation

Transcriptional analysis of the cyanotroph Pseudomonas pseudoalcaligenes CECT5344 in response to cyanide present in wastewaters from industrial activities, such as jewelry and electroplating activities Four-conditions experiment, including three different nitrogen sources (ammonium, sodium cyanide o...

ORGANISM(S): Pseudomonas pseudoalcaligenes CECT 5344

2016-01-27 | E-GEOD-69930 | biostudies-arrayexpress

L-Glutamine metabolism and its regulation in C. glutamicum

Corynebacterium glutamicum, a gram-positive soil bacterium used for the industrial production of amino acids such as L-glutamate and L-lysine, is able to use a number of different nitrogen sources, such as ammonium, urea, or creatinine. In this communication, we show that L-glutamine serves as an ex...

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2010-10-05 | E-GEOD-19779 | biostudies-arrayexpress

Transcription profiling and proteomic profiling of Saccharomyces cerevisiae wild-type and GPA2 mutant strains

In response to limited nitrogen and abundant carbon sources, diploid Saccharomyces cerevisiae strains undergo a filamentous transition in cell growth as part of pseudohyphal differentiation. Use of the disaccharide maltose as the principal carbon source, in contrast to the preferred nutrient monosac...

ORGANISM(S): Saccharomyces cerevisiae

2008-06-15 | E-GEOD-7820 | biostudies-arrayexpress

Next generation sequencing of Phaeodactylum tricornutum grown with and without nitrogen

We have done next generation sequencing of optically thin, exponentialy growing Phaeodactylum tricornutum cultures grown with and without nitrogen source to improve our undestanding of the pathways regulation under conditions that promote lipid accumulation (N-starvation). 3 biologically independent...

ORGANISM(S): Phaeodactylum tricornutum

2015-01-02 | E-GEOD-56346 | biostudies-arrayexpress

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