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UnknownA mutualistic bacterium rescues a green alga from an antagonist.
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S-EPMC11009677 | biostudies-literature
MetabolomicsMetabolic Drug Response Phenotyping in Colorectal Cancer Organoids by LC-QTOF-MS
As metabolic rewiring is crucial for cancer cell proliferation, metabolic phenotyping of patient-derived organoids is desirable to identify drug-induced changes and trace metabolic vulnerabilities of tumor subtypes. We established a novel protocol for metabolomic and lipidomic profiling of colorecta...
2021-10-12 | MTBLS2130 | MetaboLights
Proteomicsmulti-omics studies reveal how ambient temperatures govern Chlamydomonas’ cellular responses
Understanding microalgal responses to subtle temperature changes is critical, as they are primary producers that drive ecosystem productivity and food web dynamics. Even small shifts may alter algal fitness and reshape interactions with other microbes. In this study, C. reinhardtii was grown at non-...
ORGANISM(S): Chlamydomonas reinhardtii 
2026-05-19 | PXD067459 | Pride
Chlamydomonas Flagellar proteome Ambient temperature Secretome 
ProteomicsGlobal assessment of protein-protein crosslinking in ex vivo eRIC samples
Male mice on a homogenous C57BL6/J genetic background were sacrificed at 11 to 13 weeks of age by cervical dislocation. Kidneys were immediately harvested, flash frozen in liquid nitrogen and stored at -80°C until use. Animal handling was in accordance with guidelines approved by the European Molecu...
ORGANISM(S): Mus musculus (Mouse) 
2023-03-02 | PXD038100 | Pride
Rna interactome capture. Rbp Ric Eric Rna binding protein Rbpome 
ProteomicsEnhanced RNA Interactome capture (eRIC) and total proteome of mouse brain, kidney and liver
Male mice on a homogenous C57BL6/J genetic background were sacrificed at 11 to 13 weeks of age by cervical dislocation. Brain, kidneys and liver were immediately harvested, flash frozen in liquid nitrogen and stored at -80°C until use. Animal handling was in accordance with guidelines approved by...
ORGANISM(S): Mus musculus (Mouse) 
2023-03-02 | PXD032113 | Pride
Rbp Ric Rna interactome capture Eric Rna binding protein Rbpome 
ProteomicsNon-poly(A) RNA Interactome capture (RIC) of mouse liver
Male mice on a homogenous C57BL6/J genetic background were sacrificed at 11 to 13 weeks of age by cervical dislocation. Liver were immediately harvested, flash frozen in liquid nitrogen and stored at -80°C until use. Animal handling was in accordance with guidelines approved by the European Molecula...
ORGANISM(S): Mus musculus (Mouse) 
2023-03-02 | PXD038099 | Pride
Rna interactome capture. Rbp Ric Eric Rna binding protein Rbpome 
ProteomicsNon-poly(A) RNA Interactome Capture (RIC) of mouse brain, kidney and liver
Male mice on a homogenous C57BL6/J genetic background were sacrificed at 11 to 13 weeks of age by cervical dislocation. Brain, kidneys and liver were immediately harvested, flash frozen in liquid nitrogen and stored at -80°C until use. Animal handling was in accordance with guidelines approved by th...
ORGANISM(S): Mus musculus (Mouse) 
2023-03-02 | PXD038076 | Pride
Rna interactome capture. Rbp Ric Eric Rna binding protein Rbpome 
TranscriptomicsmRNAseq of human sputum macrophages and alveolar-like monocyte-derived macrophages of healthy controls and NSAID-exacerbated respiratory disease (N-ERD) patients
NSAID-exacerbated respiratory disease (N-ERD) represents a particularly severe endotype of chronic rhinosinusitis with nasal polyps (CRSwNP), which affects around 10-16% of CRSwNP patients. N-ERD is characterized by severe and refractory nasal polyposis, bronchial asthma and intolerance to non-stero...
ORGANISM(S): Homo sapiens 
2020-06-30 | E-MTAB-7965 | biostudies-arrayexpress
TranscriptomicsWhole-genome methylation profiling of monocytes and alveolar-like monocyte-derived macrophages from healthy controls and NSAID-exacerbated respiratory disease (N-ERD) patients
NSAID-exacerbated respiratory disease (N-ERD) represents a particularly severe endotype of chronic rhinosinusitis with nasal polyps (CRSwNP), which affects around 10-16% of CRSwNP patients. N-ERD is characterized by severe and refractory nasal polyposis, bronchial asthma and intolerance to non-stero...
ORGANISM(S): Homo sapiens 
2020-07-31 | E-MTAB-8065 | biostudies-arrayexpress
TranscriptomicsDNA methylation data from primary neuroblastoma tumors
Genome wide DNA methylation profiling of primary neuroblastomas. The Illumina 450k methylation array was used to obtain DNA methylation profiles across approximately 485,000 CpGs in 105 neuroblastomas. Tumors were derived from 40 low-risk, 9 intermediate-risk and 56 high-risk patients. Bisulphite c...
ORGANISM(S): Homo sapiens 
2016-09-08 | E-GEOD-73515 | biostudies-arrayexpress
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