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MetabolomicsStudy on root metabolism of cassava TRV-MeCOMT8

This project is based on non targeted metabolomics analysis of cassava (Manihot esculenta) root samples. LC-MS/MS is used to obtain metabolite characteristic peaks and perform peak extraction, alignment, and quantification. Differential metabolites are screened, with a focus on flavonoid and phen...

2026-05-06 | MTBLS14086 | MetaboLights
MetabolomicsVariations in carbon flux allocation among cassava (Manihot esculenta) cultivars arise from balanced competition between starch accumulation and structural component development

Cassava (Manihot esculenta Crantz) storage roots exhibit significant variation in starch content among cultivars, yet the metabolic and molecular mechanisms governing carbon allocation between storage and structural components remain poorly understood. Here, we investigated carbon partitioning in...

2025-12-20 | MTBLS13541 | MetaboLights
TranscriptomicsDigital gene expression analysis of ACMV-infected cassava
Cassava mosaic disease caused by cassava begomoviruses is the most serious disease of cassava in Africa. However, the molecular mechanisms leading to symptom development of infected cassava plants are poorly understood. Here a high throughput digital gene expression profiling (DGE) based on Illumina...
ORGANISM(S): Manihot esculenta 
2014-04-01 | E-GEOD-47224 | biostudies-arrayexpress
ProteomicsLarge-scale proteome characterization of the cassava root
Cassava is the most important root crop in the tropics but rapid post-harvest physiological root deterioration (PPD) is a major constraint to commercial cassava production. We used label-free quantitative proteomics to generate an extensive cassava root and PPD proteome. Over 2400 unique proteins we...
ORGANISM(S): Manihot esculenta (Cassava) (Jatropha manihot) 
2014-06-03 | PXD000587 | Pride
Cassava Proteomics Root Post-harvest deterioration 
TranscriptomicsModerate stress acclimation provides immunity to stress by rewiring regulatory networks and inducing genes with protective functions in Cassava
Stress acclimation is an effective mechanism that plants acquired for adaption to dynamic environmental conditions. After undergoing cold acclimation, plants become more tolerant to cold stress. In order to understand the mechanism of cold acclimation, we performed a systematic, comprehensive study ...
ORGANISM(S): Manihot esculenta 
2014-08-18 | E-GEOD-52176 | biostudies-arrayexpress
TranscriptomicsCassava sRNA libraries from non-infected and infected tissues with Xanthomonas axonopodis. pv manihotis
microRNAs can play a crucial role in stress response in plants, including biotic stress. Some miRNAs are known to respond to bacterial infection. This work has addressed the role of miRNAs in Manihot esculenta (cassava)-Xanthomonas axonopodis pv. manihotis (Xam) interaction. Illumina sequencing was ...
ORGANISM(S): Manihot esculenta 
2011-12-01 | E-GEOD-29379 | biostudies-arrayexpress
ProteomicsEfficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes
Cassava’s storage roots represent one of the most important sources of nutritional carbohydrates worldwide. Particularly, smallholder farmers in Sub-Saharan Africa depend on this crop plant, where resilient and yield-improved varieties are of vital importance to support steadily increasing populatio...
ORGANISM(S): Manihot esculenta (Cassava) (Jatropha manihot) 
2023-06-21 | PXD038813 | Pride
Cassava 
ProteomicsProteomics of cassava storage roots before and after shoot pruning
Cassava (Manihot esculenta Crantz) is a food security crop for approximately 800 million people, primarily in developing economies. Cassava root yield is determined by the allocation of photoassimilated carbon within the plant, yet there is limited molecular and biochemical information about source-...
ORGANISM(S): Manihot esculenta (Cassava) (Jatropha manihot) 
2026-04-01 | PXD045690 | Pride
Manihot esculenta Storage roots Pruning Cassava 
TranscriptomicsCassava responses to Pathogenic and non-pathogenic Xanthomonas axonopodis pv manihotis
Xanthomonas axonopodis pv. manihotis (Xam) is a gram negative bacterium causing Cassava Bacterial Blight (CBB), an important limitation for cassava production. The genetic bases underlying cassava resistance and susceptibility to different Xam strains are currently unknown. To identify genes and pat...
ORGANISM(S): Manihot esculenta 
2014-10-01 | E-GEOD-53369 | biostudies-arrayexpress
TranscriptomicsTranscriptional response of virus-infected cassava and identification of putative sources of resistance for cassava brown streak disease
Analysis of transcriptional response of virus-infected cassava and identification of putative sources of resistance for cassava brown streak disease transcriptome analysis of two varieties of cassava that differ in their level of resistance to cassava brown streak virus.
ORGANISM(S): Manihot esculenta 
2014-04-03 | E-GEOD-56467 | biostudies-arrayexpress
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