Cbs - OmicsDI

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Genomics (2778)
Unknown (2250)
Transcriptomics (224)
Proteomics (122)
Other (15)
Metabolomics (5)
Models (1)
Methylation profiling (1)

Organisms

Homo sapiens (127)
Mus musculus (67)
Aspergillus niger (28)
Aspergillus niger CBS 513.88 (25)
Nakaseomyces glabratus CBS 138 (19)
Nakaseomyces glabratus (15)
Scheffersomyces stipitis CBS 6054 (5)
Caenorhabditis elegans (5)
Saccharomyces cerevisiae (5)
Drosophila melanogaster (5)
Pseudomonas aeruginosa (3)
Streptococcus pneumoniae (3)
Candida albicans WO-1 (2)
Bifidobacterium breve UCC2003 (2)
Schizosaccharomyces pombe (2)
Rattus norvegicus (2)
Maudiozyma bulderi (1)
Exophiala dermatitidis (1)
Saccharomyces bayanus x Saccharomyces cerevisiae (1)
Saccharomyces uvarum (1)
Brassica rapa subsp. rapa (1)
Saccharomyces pastorianus (1)
Helicobacter pylori (1)
Salmo salar (1)
Bos taurus (1)
Mycobacterium tuberculosis H37Rv (1)
Triticum aestivum (1)
Sinorhizobium meliloti (1)
Corynebacterium glutamicum ATCC 13032 (1)
Danio rerio (1)

Organisms

Dichomitus squalens (344)
Homo sapiens (73)
Mus musculus (49)
Penicillium subrubescens (47)
Microascus trigonosporus CBS 218.31 (31)
Corollospora maritima (22)
Phaffia rhodozyma (22)
Xylaria cubensis (18)
Xylaria scruposa (18)
Aspergillus niger (17)
Debaryomyces singareniensis (16)
Phyllosticta citricarpa (14)
Debaryomyces hansenii (14)
Colletotrichum phormii (12)
Phyllosticta capitalensis (12)
Scheffersomyces xylosifermentans (10)
Nemania diffusa (9)
Biscogniauxia mediterranea (9)
Tilletia caries (8)
Xylaria arbuscula (8)
Nakaseomyces glabratus CBS 138 (7)
Saccharomyces pastorianus (7)
Lipomyces starkeyi (7)
Phyllosticta citriasiana (6)
Lachancea kluyveri (6)
Laccaria bicolor (6)
Colletotrichum acutatum (6)
Mucor flavus (6)
Thermothielavioides terrestris (5)
Gilbertella persicaria (5)

Repository

ENA (2732)
geo (166)
biostudies-arrayexpress (120)
pride (102)
iProX (9)
EGA (6)
jPOST (5)
MetaboLights (4)
ExpressionAtlas (1)
BioModels (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (13)
Fungal cell (4)
Fungal spore (3)
Mycelium (3)
Urine (3)
Vegetative cell (sensu Fungi) (3)
Conidium (2)
Epithelial cell of lung (2)
Liver (2)
Urine (1)
Blood serum (1)
Brain (1)
Cell suspension culture (1)
Culture condition:yeast extract-grown cell (1)
Defense response to fungus (1)
Embryonic stem cell (1)
Extracellular membrane-bounded organelle (1)
Gluteal muscle (1)
Leaf (1)
Lung (1)
Macrophage (1)
Monocyte (1)
Preadipocyte (1)
Respiratory tract epithelium (1)
Response to fungus (1)
Root (1)
Sperm (1)
Spore (1)
T cell (1)
Testis (1)

Disease

Non-small cell lung carcinoma (3)
Cryptococcosis (3)
Disease free (3)
Aspergillosis (1)
Candidiasis (1)
Down syndrome (1)
Fungal infectious disease (1)
Fungal meningitis (1)
Keratitis (1)

Technology Type

Mass Spectrometry (103)
Shotgun proteomics (49)
Bottom-up proteomics (26)
Affinity purification coupled with mass spectrometry proteomics (13)
Data-dependent acquisition (9)
Gel-based experiment (8)
Data-independent acquisition (7)
Top-down proteomics (5)
Mass spectrometry (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
ESI (1)
HDMSE (1)
MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
Illumina HiSeq 4000 (2)
Agilent Technologies Scanner, model G2565CA (1)
Scanning hardware (1)
Illumina NovaSeq X (1)
Illumina MiSeq (1)
Illumina HiSeq 2000 (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
LTQ-Orbitrap (1)

Publication Date

2025 (39)
2012 (35)
2022 (30)
2011 (28)
2013 (27)
2023 (26)
2015 (25)
2021 (25)
2020 (23)
2014 (23)
2024 (21)
2026 (18)
2016 (18)
2010 (16)
2019 (15)
2008 (13)
2018 (12)
2017 (6)
2009 (5)
2005 (1)
2007 (1)
2006 (1)

CHEBI ID

CHEBI:49092 (1)
CHEBI:36022 (1)
CHEBI:64956 (1)
CHEBI:166940 (1)
CHEBI:145749 (1)
CHEBI:72419 (1)
CHEBI:23956 (1)
CHEBI:37655 (1)
CHEBI:29002 (1)
CHEBI:47937 (1)
CHEBI:132599 (1)
CHEBI:53455 (1)
CHEBI:131886 (1)
CHEBI:74349 (1)
CHEBI:15440 (1)
CHEBI:46983 (1)
CHEBI:16016 (1)
CHEBI:5445 (1)
CHEBI:18394 (1)
CHEBI:28189 (1)
CHEBI:28645 (1)
CHEBI:17173 (1)
CHEBI:88063 (1)
CHEBI:46342 (1)
CHEBI:27605 (1)
CHEBI:48300 (1)
CHEBI:42111 (1)
CHEBI:25627 (1)
CHEBI:46905 (1)
CHEBI:17992 (1)

Metabolite Name

Aminoacetone (2)
Linoleamide (2)
Uracil (2)
Octadecanamide (2)
Niacinamide (2)
L-Lysine (2)
L-Proline (2)
Piperidine (2)
Pantothenic acid (2)
L-Glutamic acid (2)
Isoquinoline (2)
Choline (2)
4-Hydroxybenzaldehyde (2)
Glycocholic acid (2)
Oleamide (2)
Adenosine (2)
Histamine (2)
L-Glutamine (2)
Creatinine (2)
L-Isoleucine (2)
L-Methionine (2)
L-Phenylalanine (2)
1-O-[(3,8,9,24E)-12,15-Dihydroxy-26-oxo-3-{[(1R)-6-O-pentopyranosylhexopyranosyl]oxy}-9,19-cyclolanost-24-en-26-yl]hexopyranose (1)
1-O-[(3alpha,5xi,9xi,16alpha,18xi)-16-Hydroxy-28-oxo-3-{[4-O-(beta-D-xylopyranosyl)-beta-D-glucopyranuronosyl]oxy}olean-12-en-28-yl]-beta-D-glucopyranose (1)
1-O-((3,5.Xi.,9.Xi.)-3-((2-O-(6-Deoxy--L-mannopyranosyl)--L-arabinopyranosyl)oxy)-23-hydroxy-28-oxoolean-12-en-28-yl)-6-O--D-glucopyranosyl--D-glucopyranose (1)
4-[(7R,11S,14S,16R)-14-[(4-methoxy-6-methyl-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxan-2-yl)oxy]-7,11-dimethyl-2-oxapentacyclo[8.8.0.0a,l.0l,.0aa,a]octadec-5-en-6-yl]-2,5-dihydrofuran-2-one (1)
Respinomycin-A2 (1)
2-(2-{[2-(2-{[2-(2-{[2-(2-hydroxypropanamido)-3-methylbutanoyl]oxy}-3-methylbutanamido)-3-methylbutanoyl]oxy}propanamido)-3-methylbutanoyl]oxy}-3-methylbutanamido)-3-methylbutanoic acid (1)
Conophyllidine (1)
Vicibactin (1)

First Public Date

2025 (470)
2019 (393)
2018 (315)
2024 (296)
2013 (208)
2017 (199)
2016 (186)
2014 (162)
2020 (156)
2021 (109)
2022 (72)
2023 (64)
2026 (49)
2015 (48)
2012 (5)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada (4)
Nantong Key Laboratory of Environmental Toxicology, Department of Occupational Medicine and Environmental Toxicology, School of Public Health, Nantong University, Nantong, China (4)
1. Key Laboratory of Photoelectric Conversion and Utilization of Solar Energy, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China. 2. Shandong Energy Institute, Qingdao 266101, China. 3. Qingdao New Energy Shandong Laboratory, Qingdao 266101, China. (2)
1Department of Biology, National and Kapodistrian University of Athens, Panepistimioupolis, Athens, 15784, Greece. 2Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, Heraklion, 70013, Greece. (2)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (2)
J. Craig Venter Institute, Rockville, MD 20850 (2)
Jiangsu Academy of Agricultural Sciences (2)
Laboratory of Enzymology and Molecular Biology (LEBIMO), Institute of Biology, University of Campinas (UNICAMP) (2)
Micalis Institute, INRA, PAPPSO, Université Paris-Saclay, Jouy-en-Josas, France. (2)
Molecular and Cellular Biology, University of Guelph, Canada (2)
1 Max-Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Strasse 14, 35043 Marburg, Germany 2 University of Marburg, Center for Synthetic Microbiology (SYNMIKRO) & Departments of Chemistry and Biology, Karl-von-Frisch Strasse 14, 35043 Marburg, Germany (1)
1. Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany, 2. Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom (1)
1. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany, 2. Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, United Kingdom (1)
Analytical Research Center for Organic and Biological Molecules, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai 201203, China (1)
Andreas Otto, Institute for Microbiology, Ernst-Moritz-Arndt-University of Greifswald, F.-L. Jahnstrasse 15, 17489 Greifswald, Germany (1)
BIOCEV, First Faculty of Medicine, Charles University, 252 50 Vestec, Czech Republic (1)
Beckman Research Institute of City of Hope (1)
Bio-Organic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands (1)
Bioanalytical Mass Spectrometry Group, Max-Planck-Institute for Multidisciplinary Sciences, Goettingen Bioanalytics, Institute for Clinical Chemistry, Goettingen (1)
CBS-KNAW FUNGAL BIODIVERSITY CENTRE (1)
Centre de Biologie Structurale (CBS), CNRS, INSERM, Univ Montpellier, 34090 Montpellier, France (1)
Chemical Biochemical and Environmental Engineering, UMBC, USA (1)
Cold Spring Harbor Laboratory (1)
College of Life and Health Sciences, Northeastern University, Shenyang, China (1)
Department of Allergy, Beijing Shijitan Hospital, Capital Medical University, Beijing, China. (1)
Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland (1)
Department of Biology, National and Kapodistrian University of Athens, Panepistimioupolis, Athens, 15784, Greece. Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, Heraklion, 70013, Greece. (1)
Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, 2800 Kgs. Lyngby, Denmark (1)
Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Korea (1)
Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK Kavli Institute for NanoScience Discovery, Dorothy Crowfoot Hodgkin Building, Oxford OX1 3QU, UK (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

fungi (660)
bacteria (6)

Modification

15.994915 (1)
57.021464 (1)
6x(2)H labeled dimethylated L-arginine (1)
N6-dimethyl-L-lysine (1)

Study type

Comparative genomic hybridization by array (41)
Transcription profiling by array (41)
RNA-seq of coding RNA (17)
ChIP-seq (4)
Genotyping by array (3)
Proteomic profiling by array (3)
Transcription profiling by tiling array (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
DNA-seq (1)

Release Date

2022 (243)
2021 (193)
2025 (190)
2023 (177)
2020 (165)
2024 (162)
2016 (142)
2019 (136)
2014 (121)
2012 (104)
2013 (102)
2017 (102)
2015 (101)
2018 (98)
2011 (72)
2010 (57)
2009 (45)
2008 (44)
2026 (25)
2007 (25)
2003 (13)
2006 (12)
2005 (11)
2001 (10)
2004 (7)
2002 (5)
2000 (3)
1999 (3)
1998 (2)

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Expression analysis of Pichia stipitis CBS 6054 grown in glucose or xylose

Investigation of whole genome gene expression level changes in Pichia stipitis CBS 6054 grown aerobically in xylose, compared to the same strain grown aerobically in glucose. A six array study using total RNA recovered from three separate cultures of Pichia stipitis CBS 6054 grown in glucose and thr...

ORGANISM(S): Scheffersomyces stipitis CBS 6054

2011-10-19 | E-GEOD-24854 | biostudies-arrayexpress

Changes in gene expression in implantation and inter-implantation sites by absence of Cbs

This SuperSeries is composed of the following subset Series: GSE22187: Changes in gene expression in implantation sites by absence of Cbs GSE22189: Changes in gene expression in inter-implantation sites by absence of Cbs Refer to individual Series

ORGANISM(S): Mus musculus

2012-05-30 | E-GEOD-22310 | biostudies-arrayexpress

Changes in gene expression in implantation sites by absence of Cbs

The change in gene expression on the 8th day of gestation was investigated using DNA microarrays. Uterine gene expression of implantation sites was analysed in female mice. Female mice, C57BL/6jXOla129 genetic background were used for experiments. Mice, housed in sterile filter-top cages (3-4 per ...

ORGANISM(S): Mus musculus

2012-05-30 | E-GEOD-22187 | biostudies-arrayexpress

Changes in gene expression in inter-implantation sites by absence of Cbs

The change in gene expression on the 8th day of gestation was investigated using DNA microarrays. Uterine gene expression of interimplanted sites was analyzed in female mice. Female mice, C57BL/6jXOla129 genetic background were used for experiments. Mice, housed in sterile filter-top cages (3-4 per ...

ORGANISM(S): Mus musculus

2012-05-30 | E-GEOD-22189 | biostudies-arrayexpress

Endogenous Elevation of Homocysteine Induces Retinal Neuron Death in the Cystathionine-b-Synthase Mutant Mice

The effects of endogenous elevation of homocysteine on retinal gene expression were screened by microarray analysis, which was performed in triplicate (i.e., three different paired RNA samples) with RNA isolated from neural retinas of cbs+/- HM at 5-weeks after a methionine diet and age-matched wild...

ORGANISM(S): Mus musculus

2014-04-04 | E-GEOD-56458 | biostudies-arrayexpress

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

Using transcriptomics, the strain-specific metabolism was mapped for two whole-genome sequenced strains of Aspergillus niger Keywords: Strain comparison Two strains grown in controlled bioreactors, three biological replicates each.

ORGANISM(S): Aspergillus niger

2011-03-07 | E-GEOD-10983 | biostudies-arrayexpress

Pseudomonas sp. CBS

Pseudomonas sp. CBS Genome sequencing

PRJNA868558 | ENA

Rubrivivax gelatinosus CBS

Rubrivivax gelatinosus CBS Genome sequencing and assembly

PRJNA85569 | ENA

Dendrothele bispora CBS 962.96 isolate:CBS 962.96

Dendrothele bispora CBS 962.96 transcriptome

PRJNA459573 | ENA

Myriangium duriaei CBS 260.36 isolate:CBS 260.36