Ce - OmicsDI

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Unknown (34814)
Transcriptomics (8273)
Genomics (1495)
Proteomics (1130)
Metabolomics (515)
Clinical (28)
Other (25)
Models (7)
Methylation profiling (6)
Genomic (4)
Multiomics (2)

Organisms

Homo sapiens (2353)
Mus musculus (2097)
Arabidopsis thaliana (658)
Drosophila melanogaster (617)
Saccharomyces cerevisiae (349)
Caenorhabditis elegans (286)
Rattus norvegicus (248)
Danio rerio (166)
Escherichia coli (102)
Schizosaccharomyces pombe (100)
Bos taurus (76)
Thermus thermophilus HB8 (71)
Gallus gallus (63)
Mycobacterium tuberculosis (61)
Staphylococcus aureus (58)
Candida albicans (53)
Streptomyces coelicolor (38)
Escherichia coli str. K-12 substr. MG1655 (36)
Sus scrofa (35)
Zea mays (33)
Rhizobium leguminosarum (30)
Salmo salar (29)
Escherichia coli K-12 (28)
Triticum aestivum (27)
Apis mellifera (24)
Xenopus laevis (24)
Campylobacter jejuni (23)
Streptococcus pneumoniae (23)
Salmonella enterica subsp. enterica serovar Typhimurium (23)
Streptomyces venezuelae (22)

Organisms

Homo sapiens (60)
Mus musculus (57)
Macaca mulatta (6)
Rattus norvegicus (6)
Caenorhabditis elegans (5)
Echinococcus granulosus (4)
Medicago truncatula (4)
Bos taurus (4)
Gallus gallus (3)
soil metagenome (3)
Canis lupus familiaris (2)
gut metagenome (2)
mouse gut metagenome (2)
Sorangium cellulosum So ce56 (1)
Candidatus Carsonella ruddii CE isolate Thao2000 (1)
Sphingomonas sp. PP-CE-3G-477 (1)
Sphingomonas sp. PP-CE-3A-406 (1)
Sphingomonas sp. PP-CE-1G-424 (1)
Sphingomonas sp. PP-CE-1A-559 (1)
Penicillium rubens Wisconsin 54-1255 (1)
Flavobacterium sp. TN-1 (1)
human reproductive system metagenome (1)
Synchalara rhombota (1)
Vigna unguiculata (1)
Chloroflexia (1)
Bradysia coprophila (1)
Salvia sclarea (1)
Colocasia esculenta (1)
Bradyrhizobium sp. Ce-3 (1)
Methanococcus maripaludis (1)

Repository

biostudies-arrayexpress (9184)
pride (802)
ENA (462)
MetaboLights (311)
MetabolomicsWorkbench (195)
MassIVE (194)
EGA (123)
geo (90)
jPOST (42)
iProX (36)
PeptideAtlas (26)
PAXDB (10)
GNPS (9)
PanoramaPublic (6)
BioModels (5)
dbGaP (4)
GPMDB (4)
Cell Collective (2)
EVA (1)
LINCS (1)

Tissue

Blood (69)
Cultured cells (19)
Liver (17)
Feces (13)
Macrophages (8)
Adipose tissue (7)
Muscle (6)
Unspecified (5)
Brain (5)
Hep G2 cells (5)
Urine (5)
Bacterial cells (4)
Colon (3)
Cecum (3)
Lung (3)
LNCaP cells (2)
Mitochondria (2)
Cells (2)
Prostate (2)
B-cells (2)
Heart (2)
Ovaries (1)
Tumor tissue (1)
Vaginal epithelium (1)
Ovarian cancer cells (1)
Ventricles (1)
Epididymal fat (1)
Whole animals (1)
Vitreous (1)
Cyst fluid (1)

Disease

Normal (64)
Breast cancer (25)
Lymphoma (10)
Melanoma (9)
Colon cancer (9)
Prostate cancer (8)
Colorectal cancer (6)
Neuroblastoma (4)
Cancer (4)
Osteosarcoma (4)
Breast adenocarcinoma (3)
Carcinoma (3)
Adenocarcinoma (3)
Rheumatoid arthritis (3)
Chronic myeloid leukemia (3)
Colorectal Carcinoma (2)
Mitochondrial complex I deficiency (2)
Infiltrating ductal carcinoma (2)
Squamous Cell Carcinoma (2)
Primary tumor (2)
Porphyria NOS (2)
Squamous cell carcinoma (2)
Leukemia (2)
Hyperglycaemic (2)
Papillary thyroid carcinoma (2)
Not infected (2)
Reference (2)
Mammary tumor (2)
Gastric cancer (2)
Colorectal adenocarcinoma (2)

Technology Type

Mass Spectrometry (997)
Shotgun proteomics (420)
Mass spectrometry (207)
ESI (188)
Bottom-up proteomics (154)
Mass spectrometry assay (94)
Data-dependent acquisition (91)
Affinity purification coupled with mass spectrometry proteomics (81)
SWATH MS (65)
Gel-based experiment (52)
SRM/MRM (40)
NMR spectroscopy (15)
EI (13)
Illumina 15K (8)
Other (4)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (2)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Illumina (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Ilumina HumanHap550-2v3_B-Beadstudio (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Illumina HiSeq 2500 (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Fluorescence intensity (1)
Fluorescence imaging (1)
NMR spectroscopy assay (1)
Multiple (1)

Instrument Platform

Illumina NovaSeq 6000 (410)
NextSeq 500 (294)
Illumina HiSeq 4000 (197)
Illumina HiSeq 2000 (169)
Illumina HiSeq 2500 (167)
NextSeq 550 (104)
Illumina MiSeq (52)
NextSeq 2000 (51)
Illumina NovaSeq X (44)
Axon GenePix 4000B scanning hardware (29)
Scanning hardware (25)
GenePix 4000B [Axon Instruments] (24)
Illumina HiSeq 1500 (24)
Axon- GenePix4000B (22)
Illumina HiSeq 3000 (22)
Axon GenePix 4000A scanning hardware (21)
GenePix 4000A [Axon Instruments] (21)
Illumina Genome Analyzer IIx (17)
Illumina Genome Analyzer II (17)
G2565BA DNA microarray scanner [Agilent] (15)
N/A (12)
DNBSEQ-G400 (11)
HiSeq X Ten (11)
G2565AA DNA microarray scanner [Agilent] (10)
Variable Atmosphere Incubator (9)
NA (9)
Chromium 10x (8)
ScanArray 5000 [PerkinElmer] (8)
ArrayWoRx Biochip Reader [Applied Precision] (8)
ScanArray 4000XL [PerkinElmer] (8)

Publication Date

2010 (1167)
2013 (933)
2011 (899)
2014 (827)
2012 (782)
2015 (665)
2008 (514)
2016 (504)
2009 (474)
2025 (428)
2022 (407)
2026 (379)
2023 (370)
2021 (344)
2024 (341)
2007 (299)
2020 (276)
2018 (224)
2019 (213)
2005 (187)
2006 (181)
2017 (177)
2004 (88)
2003 (15)
2002 (1)
2027 (1)

UNIPROT ID/AC

G7IDE5_MEDTR (6)
A0A072VQN0_MEDTR (6)
G7K0T1_MEDTR (6)
G7II48_MEDTR (6)
G7I9Z6_MEDTR (6)
G7JIX5_MEDTR (6)
3880.AES67519 (6)
G7K6I4_MEDTR (6)
G7J9Y3_MEDTR (6)
G7J5D7_MEDTR (6)
G7L1R5_MEDTR (6)
A2Q3B1_MEDTR (6)
G7KCJ8_MEDTR (6)
G7JKP3_MEDTR (6)
G7KNF5_MEDTR (6)
I3SKT5_MEDTR (6)
G7KJ82_MEDTR (6)
G7KTB1_MEDTR (6)
G7JUZ2_MEDTR (6)
3880.AES67535 (6)
G7KE81_MEDTR (6)
G7IVW0_MEDTR (6)
G7J7W0_MEDTR (6)
G7L8T1_MEDTR (6)
G7KWT1_MEDTR (6)
G7L7X6_MEDTR (6)
G7KVX6_MEDTR (6)
G7IWS3_MEDTR (6)
G7JYM2_MEDTR (6)
P0AC51 (1)

ENSEMBL ID

ENSG00000170477 (11)
ENSG00000147251 (3)
ENSG00000247315 (2)
ENSG00000229353 (1)

CHEBI ID

CHEBI:15891 (62)
CHEBI:16335 (57)
CHEBI:17596 (54)
CHEBI:17368 (54)
CHEBI:17568 (53)
CHEBI:16750 (51)
CHEBI:30769 (51)
CHEBI:17750 (50)
CHEBI:16704 (50)
CHEBI:16919 (50)
CHEBI:15354 (50)
CHEBI:16737 (48)
CHEBI:16708 (47)
CHEBI:17562 (47)
CHEBI:15741 (47)
CHEBI:15428 (45)
CHEBI:16467 (43)
CHEBI:17295 (42)
CHEBI:28044 (41)
CHEBI:17154 (41)
CHEBI:7916 (41)
CHEBI:16643 (40)
CHEBI:17895 (40)
CHEBI:16040 (39)
CHEBI:17509 (39)
CHEBI:16015 (39)
CHEBI:32816 (39)
CHEBI:15971 (38)
CHEBI:16027 (37)
CHEBI:29105 (1)

Metabolite Name

Hypoxanthine (67)
Adenosine (58)
Uracil (55)
Creatine (55)
L-Phenylalanine (55)
Cytidine (53)
Betaine (52)
Choline (52)
Inosine (52)
Taurine (50)
Xanthine (47)
Guanosine (47)
Creatinine (47)
Uridine (46)
Adenine (45)
Cytosine (44)
Guanine (43)
L-Glutamine (42)
L-Arginine (41)
L-Histidine (41)
L-Tryptophan (39)
L-Alanine (38)
L-Lysine (38)
Xanthosine (38)
L-Leucine (38)
L-Methionine (37)
L-Tyrosine (37)
Thymine (36)
Histamine (36)
L-Proline (34)

First Public Date

2025 (75)
2024 (69)
2026 (63)
2023 (45)
2022 (39)
2021 (38)
2018 (28)
2014 (24)
2017 (21)
2020 (16)
2019 (15)
2013 (13)
2015 (9)
2016 (7)

Modelling Approach

Physiologically based pharmacokinetic model (2)
Ordinary differential equation model (1)
Constraint-based model (1)

Study status

Completed (13)
Recruiting (4)
Ongoing (3)
Active, not recruiting (3)
Not provided (2)
Suspended (1)
Terminated (1)
Not yet recruiting (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (11)
Centre for Proteome Research, University of Liverpool, Liverpool, UK (9)
The Institute of Cancer Research (7)
Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (6)
University Hospital Cologne (6)
Cellzome, a GSK company (5)
Military Health Institute, Prague, Czech Republic (4)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (4)
Clinical Proteomics (3)
Center of Human and Molecular Biology (ZHMB), Saarland University School of Medicine, Homburg, Germany (3)
Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK. (3)
Research Centre for Genetic Engineering and Biotechnology “Georgi D Efremov”, Macedonian Academy of Sciences and Arts, Skopje, Krste Misirkov 2, 1000 Skopje, Republic of North Macedonia (3)
Institute for Genetics, CECAD Research Center, University of Cologne, Joseph-Stelzmann-Straße 26, 50931 Cologne, Germany (3)
Department of Chemistry & Biochemistry, University of Maryland at College Park (3)
Northeastern University (3)
Baylor College of Medicine (3)
Signalling ISP, Babraham Institute, Cambridge, UK (3)
Texas Tech University (3)
Centre for Proteome Research, Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB, U.K (3)
Department of Chemistry and Biochemistry, University of Maryland, College Park (3)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (3)
Michigan State University (3)
Department of Plant Physiology, University of Rostock, Germany (2)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
German Center for Neurodegenerative Diseases (DZNE) Otfried-Müller-Strasse 23 72076 Tübingen Germany (2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
Massachusetts Institute of Technology, Department of Biological Engineering, David H Koch Institute for Integrative Cancer Research (2)
Helmholtz Centre for Environmental Research – UFZ, Department of Molecular Environmental Biotechnology, Leipzig, Germany (2)
Department of Biochemistry & Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark (2)
Department of Life and Environmental Sciences, University of Cagliari (2)

Keyword

Chromoendoscopy (3)
Colonoscopy (3)
Surveillance (2)
Adenoma (2)
Oxaliplatin (2)
Back-to-Back (1)
White light (1)
CE-IOUS (1)
IOUS (1)
Daraprim (1)
Retractor sponge (1)
Trendelenburg position (1)
Laparoscopic colorectal surgery (1)
Sorafénib (1)
Irinotécan (1)
XELODA (1)
Chemosensitivity (1)
Adaptive anastomoses (1)
Post-Market (1)
Small bowel cancer (1)
Double balloon endoscopy (1)
Postoperative complications (1)
BLI (1)
JNET (1)
Kudo pit pattern (1)
NBI (1)
Primovist 0,25 mmol/ml Injektionslösung, Fertigspritze (1)
Gadolinium ethoxybenzyl DTPA (1)
Contrast media (1)
Outcome Assessment (Health Care) (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (2)

Submitter Keywords

TransQST (2)

Classification

helminths (4)
fungi (1)
bacteria (1)

Modification

Not available (5)
2x(15)N labeled L-lysine (4)
4x(15)N labeled L-arginine (4)
15.994915 (2)
N6 (2)
57.021464 (2)
79.966331 (1)
-18.010565 (1)
-17.026549 (1)
42.010565 (1)
N6-dimethyl-L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (4710)
RNA-seq of coding RNA (1079)
ChIP-seq (763)
ChIP-chip by tiling array (577)
RNA-seq of coding RNA from single cells (285)
Comparative genomic hybridization by array (212)
ChIP-chip by array (175)
Other (137)
Methylation profiling by array (123)
RNA-seq of non coding RNA (115)
Unknown experiment type (95)
Methylation profiling by high throughput sequencing (85)
Transcription profiling by tiling array (79)
RNA-seq of total RNA (61)
ATAC-seq (60)
DNA-seq (51)
High-throughput sequencing (36)
Cell line - High-throughput sequencing (36)
MicroRNA profiling by array (35)
Animal - High-throughput sequencing (33)
Single nucleus RNA sequencing (31)
RIP-seq (26)
Proteomic profiling by array (24)
Genotyping by array (21)
Ribo-seq (21)
CUT&RUN (21)
Transcription profiling by RT-PCR (19)
Human - High-throughput sequencing (18)
CLIP-seq (18)
Hi-C (17)

Release Date

2022 (3896)
2023 (3693)
2021 (3685)
2025 (3525)
2024 (3183)
2020 (3013)
2019 (2432)
2018 (2253)
2015 (2080)
2016 (2041)
2014 (1928)
2017 (1921)
2013 (1754)
2010 (1673)
2012 (1496)
2011 (1483)
2009 (884)
2008 (807)
2026 (673)
2007 (520)
2006 (320)
2005 (297)
2004 (159)
2003 (79)
2001 (50)
2002 (44)
2000 (39)
1999 (31)
1998 (24)
1997 (7)

Location

Netherlands (6)
France (6)
Spain (5)
Italy (4)
China (3)
Germany (3)
Sweden (2)
Poland (2)
United States (2)
United Kingdom (2)
Austria (2)
Japan (2)
Thailand (1)
New Zealand (1)
Mexico (1)
Chile (1)
Denmark (1)
Greece (1)
South Korea (1)
Argentina (1)
Brazil (1)
Switzerland (1)

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Bradyrhizobium sp. Ce-3

Draft Genome Sequence of Bradyrhizobium sp. strain Ce-3

PRJDB12974 | ENA

Aeromonas rivipollensis strain:CE

Aeromonas rivipollensis strain:CE Genome sequencing

PRJNA1481359 | ENA

Candidatus Carsonella ruddii CE isolate Thao2000 strain:CE

Candidatus Carsonella ruddii CE isolate Thao2000 strain:CE Genome sequencing

PRJNA165179 | ENA

Acinetobacter sp. CE-15

Acinetobacter sp. CE-15 Genome sequencing

PRJNA1266666 | ENA

Metabolome analysis of plasma from Kmt2c haploinsufficient mice

We aimed to clarify the metabolomic properties of mice with haploinsufficiency in the autism spectrum disorder-related gene lysine methyltransferase 2c (Kmt2c) (Kmt2c+/fs mice). We collected plasma from control (Kmt2c+/+) and Kmt2c+/fs mice, and compared the composition of metabolites using LC-MS...

2026-09-17 | MTBLS15698 | MetaboLights

Metabolome analysis of feces from Kmt2c haploinsufficient mice

We aimed to clarify the metabolomic properties of mice with haploinsufficiency in the autism spectrum disorder-related gene lysine methyltransferase 2c (Kmt2c) (Kmt2c+/fs mice). We collected feces from control (Kmt2c+/+) and Kmt2c+/fs mice, and compared the composition of metabolites using LC-MS ...

2026-09-17 | MTBLS15699 | MetaboLights

CE-MS Top Down Proteomics Multi-lab Study

A single gene can give rise to multiple functionally distinct forms of protein molecules, called proteoforms, originating from gene mutations, RNA alternative splicing, polymorphisms, and post-translational modifications (PTMs). It is essential to characterize proteins in a proteoform-specific manne...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2025-12-18 | PXD059108 | Pride

Faecal microbiota of dogs with CE

Faecal microbiota of dogs with CE Targeted loci environmental

PRJNA692677 | ENA

Sphingomonas sp. PP-CE-1G-424

Sphingomonas sp. PP-CE-1G-424 Genome sequencing and assembly

PRJNA443282 | ENA

Sphingomonas sp. PP-CE-3G-477

Sphingomonas sp. PP-CE-3G-477 Genome sequencing and assembly

PRJNA443284 | ENA

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46348 Results

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