Cft073 - OmicsDI

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Unknown (170)
Transcriptomics (99)
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Organisms

Escherichia coli CFT073 (73)
Escherichia coli (52)
Escherichia coli str. K-12 substr. MG1655 (48)
Escherichia coli O157:H7 str. EDL933 (45)
Escherichia coli O157:H7 str. Sakai (44)
Homo sapiens (6)
Enterococcus faecalis V583 (6)
Mus musculus (5)
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Staphylococcus aureus subsp. aureus Mu50 (1)
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Escherichia sp. TW09254 (1)
Escherichia albertii (1)
Escherichia sp. Z205 (1)
Escherichia sp. TW14267 (1)
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Escherichia sp. TW11966 (1)

Organisms

Escherichia coli CFT073 (18)
Escherichia coli (10)
Mus musculus (4)
Homo sapiens (4)
Escherichia coli APEC O2 (1)
Escherichia coli 536 (1)
Escherichia coli K-12 (1)
Danio rerio (1)
Rattus norvegicus (1)

Repository

geo (76)
ENA (66)
biostudies-arrayexpress (31)
pride (6)
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HeLa cell (1)
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Disease

Urinary tract infection (1)

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Mass Spectrometry (6)
Bottom-up proteomics (3)
Shotgun proteomics (3)
Mass spectrometry (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Q Exactive (3)
NextSeq 500 (1)
Dionex UltiMate 3000 connected to Q Exactive HF-X mass spectrometer (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2016 (22)
2010 (10)
2017 (10)
2015 (9)
2014 (8)
2011 (8)
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2012 (7)
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2009 (1)
2007 (1)
2019 (1)

CHEBI ID

CHEBI:185598 (1)
CHEBI:188430 (1)
CHEBI:79785 (1)
CHEBI:190859 (1)
CHEBI:113547 (1)
CHEBI:60458 (1)
CHEBI:194565 (1)
CHEBI:63448 (1)
CHEBI:82120 (1)
CHEBI:143432 (1)
CHEBI:86598 (1)
CHEBI:7716 (1)
CHEBI:110184 (1)
CHEBI:193252 (1)
CHEBI:32144 (1)
CHEBI:194609 (1)
CHEBI:186665 (1)
CHEBI:185171 (1)
CHEBI:34875 (1)
CHEBI:17056 (1)
CHEBI:20408 (1)
CHEBI:81916 (1)
CHEBI:168748 (1)
CHEBI:36151 (1)
CHEBI:22976 (1)
CHEBI:193329 (1)
CHEBI:187311 (1)
CHEBI:175274 (1)
CHEBI:195337 (1)
CHEBI:76953 (1)

Metabolite Name

Dizocilpine (1)
17beta-Hydroxy-5alpha-androstan-3-one cyclohexanecarboxylate (1)
Desethyletomidate (1)
PC(O-16:0/4:0)[U] (1)
OG-PC (1)
PD 173074 (1)
(O)-Propionylcarnitine (1)
Salithion (1)
Promazine sulfoxide (1)
2-Butanone, 4-(6-hydroxy-2-naphthalenyl)- (1)
3-Methyl-2-butenoic acid (1)
Coniferyl benzoate (1)
Obtusifolin 2-glucoside (1)
3-Fluoro-1-(4-hydroxyphenyl)-1-propanone (1)
Rac-5,6-Epoxy-retinoyl-beta-D-glucuronide (1)
5-Hydroxy-7,2',3',4',5'-pentamethoxyflavone (1)
N-(17-hydroxy-9,12-octadecadienoyl)-glutamine (1)
2,3-Bisphospho-D-glycerate (1)
Alpha-Cyclohexylmandelic acid (1)
3,4-Dihydroxy-2-butanone 4-phosphate (1)
3,5-Dinitro-4-hydroxyphenylpyruvate (1)
Heptenoic acid (1)
[(5-hydroxy-2-methyl-2H-chromen-2-yl)methoxy]sulfonic acid (1)
Pelargonidin 3,5-di-(6-acetylglucoside) (1)
Kanugin (1)
3,4,5-trihydroxy-6-{[1-(4-methoxyphenyl)-4-methyl-3-oxopentyl]oxy}oxane-2-carboxylic acid (1)
6-({2-[4,6-dihydroxy-2-methoxy-3-(3-methylbut-2-en-1-yl)phenyl]acetyl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
DIHYDROJASMONIC ACID (1)
ETHYLNOREPINEPHRINE (1)
2-Deoxysepiapterin (1)

First Public Date

2024 (11)
2014 (10)
2025 (9)
2026 (6)
2022 (4)
2021 (4)
2020 (4)
2013 (4)
2023 (3)
2019 (3)
2016 (3)
2017 (2)
2015 (2)
2018 (1)

Classification

bacteria (31)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (2)
High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
ChIP-seq (1)

Release Date

2016 (17)
2022 (15)
2020 (14)
2013 (13)
2014 (12)
2025 (12)
2011 (10)
2008 (10)
2019 (10)
2010 (9)
2024 (8)
2023 (8)
2021 (8)
2006 (8)
2009 (7)
2018 (7)
2015 (6)
2005 (6)
2007 (5)
2017 (5)
2012 (4)
2004 (2)
1998 (2)
2026 (1)
2003 (1)
2002 (1)

Lab affiliation

Centre for Functional Protein Assemblies, Technical University of Munich, Ernst-Otto-Fischer-Straße 8, D-85748 Garching, Germany. (1)
Department of Biological Sciences, Smith College, Northampton, Massachusetts, USA. (1)
Department of Chemistry, Chair of Organic Chemistry II, Technical University of Munich, Germany (1)
Department of Pharmaceutical Sciences, University at Buffalo, US (1)
Laboratorio de Biofilms Microbianos, Departamento de Microbiología, Instituto de Investigaciones Biológicas Clemente Estable (1)
Professor of Biomolecular Chemistry at the University of Wisconsin - Madison (1)

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Escherichia coli CFT073

Escherichia coli CFT073 Raw sequence reads

PRJNA1183564 | ENA

Escherichia coli CFT073 isolate:199310

Escherichia coli CFT073 isolate:199310 Genome sequencing

PRJNA624646 | ENA

Genome wide binding sites of NsrR in uropathogenic E.coli CFT073

We applied ChIP-seq to identify genome wide binding targets of NsrR in E.coli CFT073. NsrR is a nitric oxide sensitive regulator of transcription. Genome wide binding targets of NsrR have been identified in E.coli K12 using ChIP-chip. The genome of CFT073 is about 0.6Mb larger than that of K12. In ...

ORGANISM(S): Escherichia coli CFT073

2015-06-15 | E-GEOD-69829 | biostudies-arrayexpress

Proteomic studies of Escherichia coli CFT073 and MG1655

Here we dissected a regulatory network directed by the conserved iron homeostasis regulator, Ferric Uptake Regulator (Fur), in uropathogenic E. coli strain CFT073. Comparing anaerobic genome-scale Fur DNA binding, with Fur dependent transcript expression and protein levels of the uropathogen to that...

ORGANISM(S): Escherichia coli

2020-05-27 | PXD017582 | Pride

Escherichia coli CFT073

Genome wide binding sites of NsrR in uropathogenic E.coli CFT073

PRJNA286884 | ENA

Escherichia coli CFT073

Escherichia coli CFT073 Transcriptome or Gene expression

PRJNA1310473 | ENA

Escherichia coli strain:CFT073-WAM4505

Escherichia coli strain:CFT073-WAM4505 Genome sequencing and assembly

PRJNA1453567 | ENA

Cranberry derived proanthocyanidins induce a state of iron-limitation in uropathogenic Escherichia coli CFT073 as revealed by microarray analysis

Transcriptional profiles of uropathogenic Escherichia coli CFT073 exposed to cranberry-derived proanthocyanidins (PACs) were determined. Our results indicate that bacteria grown on media supplemented with PACs were iron-deprived. To our knowledge, this is the first time that PACs have been shown to ...

ORGANISM(S): Escherichia coli

2010-12-02 | E-GEOD-25745 | biostudies-arrayexpress

Escherichia coli CFT073 isolate:PU_38

Escherichia coli CFT073 isolate:PU_38 Genome sequencing

PRJNA387644 | ENA

Escherichia coli CFT073

Uropathogenic Escherichia coli

PRJNA313 | ENA

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