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ProteomicsProphage excision switches the primary ribosome rescue pathway and rescue-associated gene regulations in Escherichia coli
Total proteome analysis of CP4-57 prophage- and ssrA-related variants in Escherichia coli. Quantification was performed by SWATH-MS method.
ORGANISM(S): Escherichia Coli 
2022-12-07 | PXD033190 | JPOST Repository
ProteomicsThe ABCF proteins in Escherichia coli individually address "hard-to-translate" nascent peptide sequences.
Total proteome analysis data for ABC-F (YheS, YbiT, EttA, and Uup) deletion strains in Escherichia coli.
ORGANISM(S): Escherichia Coli 
2024-04-26 | PXD049710 | JPOST Repository
ProteomicsA mini-hairpin shaped nascent peptide blocks translation termination by a distinct mechanism
The mini-hairpin shaped nascent peptide that blocks translation termination was found by comprehensive proteomics approach for small ORFs overexpression.
ORGANISM(S): Escherichia Coli 
2025-02-17 | PXD052430 | JPOST Repository
ProteomicsPeptides from abortive pep-tRNAs in wt and delta-pth2 strain of S. cerevisiae
The peptides obtained from RNA fraction (with TriPURE isolation reagent). Two strains (WT and delta-pth2), and three technical replicates for each strain.
ORGANISM(S): Saccharomyces Cerevisiae (baker's Yeast) 
2022-12-06 | PXD031958 | JPOST Repository
ProteomicsShotgun Proteomics Revealed Preferential Degradation of Misfolded In Vivo Obligate GroE Substrates by Lon Protease in Escherichia coli
Proteome analysis of a conditional GroE expression strain and its variants. Proteome data for the dnaKJ-deleted strain and its variant were also included.
ORGANISM(S): Escherichia Coli 
2022-06-27 | PXD033134 | JPOST Repository
ProteomicsA method to enrich polypeptidyl-tRNAs to capture snapshots of translation in the cell
Analysis of the peptides obtained from peptidyl-tRNA fraction. Peptidyl-tRNAs were purified by a new method, named PETEOS.
ORGANISM(S): Escherichia Coli 
2023-01-31 | PXD033726 | JPOST Repository
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