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ProteomicsProphage excision switches the primary ribosome rescue pathway and rescue-associated gene regulations in Escherichia coli
Total proteome analysis of CP4-57 prophage- and ssrA-related variants in Escherichia coli. Quantification was performed by SWATH-MS method.
ORGANISM(S): Escherichia Coli 
2022-12-07 | PXD033190 | JPOST Repository
ProteomicsThe ABCF proteins in Escherichia coli individually address "hard-to-translate" nascent peptide sequences.
Total proteome analysis data for ABC-F (YheS, YbiT, EttA, and Uup) deletion strains in Escherichia coli.
ORGANISM(S): Escherichia Coli 
2024-04-26 | PXD049710 | JPOST Repository
ProteomicsA mini-hairpin shaped nascent peptide blocks translation termination by a distinct mechanism
The mini-hairpin shaped nascent peptide that blocks translation termination was found by comprehensive proteomics approach for small ORFs overexpression.
ORGANISM(S): Escherichia Coli 
2025-02-17 | PXD052430 | JPOST Repository
ProteomicsE. coli wt/delta L31, SWATH, rep2
E. coli wt/delta L31 differential analysis by SWATH acquisition, library is constructed by in-house IDA acquisition, replicate 2
ORGANISM(S): Escherichia Coli 
2017-11-05 | PXD007806 | JPOST Repository
ProteomicsE. coli wt/delta L31, IDA, rep2
E. coli wt/delta L31 IDA acquisition for constructing SWATH library, replicate 2
ORGANISM(S): Escherichia Coli 
2017-11-05 | PXD007805 | JPOST Repository
ProteomicsE. coli wt/delta L31, SWATH, rep3
E. coli wt/delta L31 differential analysis by SWATH acquisition, library is constructed by in-house IDA acquisition, replicate 3
ORGANISM(S): Escherichia Coli 
2017-11-05 | PXD007808 | JPOST Repository
ProteomicsE. coli wt/delta L31, IDA, rep3
E. coli wt/delta L31 IDA acquisition for constructing SWATH library, replicate 3
ORGANISM(S): Escherichia Coli 
2017-11-05 | PXD007807 | JPOST Repository
ProteomicsE. coli wt/delta L31, SWATH, rep1
E. coli wt/delta L31 differential analysis by SWATH acquisition, library is constructed by in-house IDA acquisition, replicate 1
ORGANISM(S): Escherichia Coli 
2017-11-05 | PXD007804 | JPOST Repository
ProteomicsPeptides from abortive pep-tRNAs in wt and delta-pth2 strain of S. cerevisiae
The peptides obtained from RNA fraction (with TriPURE isolation reagent). Two strains (WT and delta-pth2), and three technical replicates for each strain.
ORGANISM(S): Saccharomyces Cerevisiae (baker's Yeast) 
2022-12-06 | PXD031958 | JPOST Repository
ProteomicsE. coli wt/delta L31, IDA, rep1
E. coli wt/delta L31 IDA acquisition for constructing SWATH library, replicate 1
ORGANISM(S): Escherichia Coli 
2017-11-05 | PXD007803 | JPOST Repository
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