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ProteomicsAffinity capture of S. cerevisiae protein after glutaraldehyde stabilization
It remains extraordinarily challenging to elucidate endogenous protein-protein interactions and proximities within the cellular milieu. The dynamic nature and the large range of affinities of these interactions augment the difficulty of this undertaking. Among the most useful tools for extracting su...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2018-10-19 | PXD001262 | Pride
Budding yeast Glutaraldehyde Affinity capture 
ProteomicsLabel-Free Quantitative Proteomics Data for NPC Permeability Barrier Dynamics
This dataset contains label-free quantitative (LFQ) mass spectrometry analyses of proteins associated with affinity-purified isolated native Saccharomyces cerevisiae nuclear pore complexes (NPCs). The study compared wild type NPCs (+CP WT NPCs) with NPCs frozen at -80°C, or incubate in buffer at 4°C...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2025-10-06 | PXD069104 | Pride
Npc Central transporter Lfq 
UnknownDynamic regulation of TFH selection during the germinal centre reaction.
Not available
S-EPMC7979475 | biostudies-literature
ProteomicsProtection of nascent DNA at stalled replication forks is mediated by phosphorylation of RIF1 intrinsically disordered region
RIF1 is a multifunctional protein that plays key roles in the regulation of DNA processing. During repair of DNA double-strand breaks (DSBs), RIF1 functions in the 53BP1-Shieldin pathway that inhibits resection of DNA ends to modulate the cellular decision on which repair pathway to engage. Under co...
ORGANISM(S): Mus musculus (Mouse) 
2022-04-14 | PXD031972 | Pride
Sq motifs Rif1 Dsb resection inhibition Dna replication fork protection Intrinsically disordered region 
ProteomicsProbing the HIV-Host Interactome in Infected Cells
Although genetically compact, HIV-1 commandeers vast arrays of cellular machinery that sustain and protect it during cycles of viral outgrowth. Transposon-mediated saturation linker scanning mutagenesis was used to isolate fully replication-competent viruses harboring a potent foreign epitope tag. U...
ORGANISM(S): Homo sapiens (Human) 
2016-07-06 | PXD003762 | Pride
Protein interactions Ap-ms Env I-dirt Vif 
UnknownA Polycomb repressive complex is required for RNAi-mediated heterochromatin formation and dynamic distribution of nuclear bodies.
Not available
S-EPMC8191774 | biostudies-literature
UnknownProtection of nascent DNA at stalled replication forks is mediated by phosphorylation of RIF1 intrinsically disordered region.
Not available
S-EPMC9007588 | biostudies-literature
UnknownStructural basis for helicase-polymerase coupling in the SARS-CoV-2 replication-transcription complex.
Not available
S-EPMC7359531 | biostudies-literature
UnknownKaryopherins remodel the dynamic organization of the nuclear pore complex transport barrier.
Not available
S-EPMC12717009 | biostudies-literature
UnknownIntegrative structure and functional anatomy of a nuclear pore complex
Not available
EMPIAR-10162 | biostudies-other
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