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TranscriptomicsTranscription profiling time series of zebrafish hearts treated with dioxin (TCDD)
For analysis of gene expression changes in the zebrafish larvae heart in response to TCDD exposure, three replicate samples of heart tissue were collected at 73, 74, 76 and 84 hours post fertilization from larvae exposed to 1 ng/ml TCDD or vehicle from 72 - 73 hours post fertilization. For analysis ...
ORGANISM(S): Danio rerio 
2006-06-29 | E-MEXP-758 | biostudies-arrayexpress
TranscriptomicsExpression data from micropropagated Vitis vinifera when transferred to ex vitro conditions
Oxidative stress can arise when in vitro propagated plants developed under low light conditions are exposed to high light during transfer to ex vitro conditions. In such a situation, among the many potential stresses to which the transferred plant can be exposed, oxidative stress is commonly experie...
ORGANISM(S): Vitis vinifera 
2011-02-10 | E-GEOD-27180 | biostudies-arrayexpress
TranscriptomicsHuman Stress and Toxicity PathwayFinder PCR Array
Whole blood was collected for styrene-exposed and control workers subjects in a fiberglass boat industry. Total RNA was extracted from blood lymphocytes, and cDNA was synthesized for profiling on the Human Stress and Toxicity PathwayFinder(tm) RT2 Profiler(tm) PCR Expression Array (PAHS-003, SABios...
ORGANISM(S): Homo sapiens 
2013-09-23 | E-MTAB-1779 | biostudies-arrayexpress
TranscriptomicsTemperature stress differentially modulates transcription in meiotic anthers of tolerant and sensitive tomato plants
We have used cDNA-AFLP and microarray analyses to profile the response of the tomato meiotic anther transcriptome to moderate heat stress condition in Moneymaker or Falcorosso and HeatSet1 tomato genotype. Combimatrix microarray technology were applied to obtain a general overview of the gene expres...
ORGANISM(S): Solanum lycopersicum 
2012-09-18 | E-GEOD-24805 | biostudies-arrayexpress
ProteomicsEffects of age and sex on protein abundance in the mouse heart
We compared protein abundance in the left and right ventricles of male and female C57BL6/J mice at 4 months and 20 months old. Frozen tissues were weighed, thawed, and cut into small pieces (2-3 mm3) on weigh boats on ice. Tissue pieces were transferred to 2.0 mL eppendorf tubes. Cold RIPA (Thermo #...
ORGANISM(S): Mus Musculus (mouse) 
2022-11-08 | PXD033719 | JPOST Repository
ProteomicsDevelopment of a high-throughput (10 minute microflow gradient) platform for quantitation of histone modifications on a new QTOF instrument
Histone post-translational modifications (PTMs) regulate gene expression patterns through epigenetic mechanisms. The 5 histone proteins (H1, H2A, H2B, H3, and H4) are extensively modified, with over 75 distinct modification types spanning more than 200 sites. Despite strong advances in mass spectrom...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-05-06 | MSV000094696 | MassIVE
ProteomicsDevelopment of a high-throughput (10 minute microflow gradient) platform for quantitation of histone modifications on a new QTOF instrument
Histone post-translational modifications (PTMs) regulate gene expression patterns through epigenetic mechanisms. The 5 histone proteins (H1, H2A, H2B, H3, and H4) are extensively modified, with over 75 distinct modification types spanning more than 200 sites. Despite strong advances in mass spectrom...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-05-06 | MSV000094695 | MassIVE
TranscriptomicsComparison of gene expression profile of bovine muscle samples
A bovine oligo microarray platform (GPL7053) was used to profile gene expression from twenty-five (25) bovine biceps brachii samples randomly collected at the slaughterhouse. Four (4) of these animals were suspected for corticosteroids treatment at tymus histological analyses. Eighteen (18) negative...
ORGANISM(S): Bos taurus 
2012-12-20 | E-GEOD-26318 | biostudies-arrayexpress
ProteomicsHeLa proteome of 12,250 protein-coding genes
We developed an optimized multi-shot proteomics workflow based on high-resolution offline high pH reversed-phase peptide separation of high peptide loads collecting many fractions that were in turn analyzed by short online chromatographic separations and fast peptide sequencing using orbitrap tandem...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000081563 | MassIVE
TranscriptomicsRNA-seq of neuronal SOX2-ablated murine suprachiasmatic nuclei against wild-type littermate controls
Mice lacking the stem/progenitor cell transcription factor, Sex determining region Y-box 2 (SOX2), in neurons of the suprachiasmatic nuclei display imprecise, poorly consolidated behavioral rhythms that do not entrain efficiently to environmental light cycles. RNA sequencing revealed that Sox2 defic...
ORGANISM(S): Mus musculus 
2019-03-18 | E-MTAB-7496 | biostudies-arrayexpress
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