Chatterjee D D - OmicsDI

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Unknown (1376)
Proteomics (85)
Transcriptomics (27)
Genomics (14)
Metabolomics (2)
Models (1)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (96)
Mus musculus (5)
Listeria monocytogenes (2)
Mycobacterium tuberculosis (2)
Caenorhabditis elegans (2)
Danio rerio (2)
Xanthomonas oryzae pv. oryzicola (1)
Xanthomonas oryzae pv. oryzae (1)
Brassica juncea (1)
Oryza sativa Indica Group (1)
Drosophila melanogaster (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Cadophora luteo-olivacea (1)
Desulfovibrio ferrophilus (1)
Rattus norvegicus (1)
Saccharomyces cerevisiae (1)
Trichoderma atroviride (1)

Organisms

Cryptococcus neoformans (1)

Repository

pride (77)
biostudies-arrayexpress (33)
EGA (9)
MassIVE (4)
MetaboLights (2)
BioModels (1)
dbGaP (1)
PAXDB (1)
PeptideAtlas (1)
ENA (1)

Tissue

Colon (19)
HCT-116 cell (18)
Oral epithelium (8)
Cell culture (6)
Epithelial cell (6)
Lung (5)
Brain (4)
Blood platelet (3)
Blood serum (3)
Blood cell (2)
Blood plasma (2)
Esophagus (2)
Head and neck squamous cell carcinoma cell line (2)
Keratinocyte (2)
Platelet (2)
Adenohypophysis (1)
Adrenal gland (1)
B cell (1)
B-lymphocyte (1)
Blood (1)
Bone marrow (1)
Cardiac muscle cell (1)
Cell suspension culture (1)
Cytotoxic T-lymphocyte (1)
Diploid cell (1)
Endothelial cell of umbilical vein (1)
Epithelial cell of lung (1)
Epithelium of esophagus (1)
MDA-MB-231 cell (1)
OKF-6 cell (1)

Disease

Non-small cell lung carcinoma (5)
Head and neck squamous cell carcinoma (4)
Multiple myeloma (3)
Prostate adenocarcinoma (3)
COVID-19 (2)
Cardiovascular system disease (2)
Colon cancer (2)
Gastric adenocarcinoma (2)
Oral cavity cancer (2)
Oral squamous cell carcinoma (2)
Parkinson's disease (2)
Acute leukemia (1)
Disease free (1)
Esophagus squamous cell carcinoma (1)
Gallbladder carcinoma (1)
Lewy body dementia (1)
Lung cancer (1)
Neck carcinoma (1)
Osteoporosis (1)
Plasmodium vivax malaria (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (77)
Shotgun proteomics (66)
Bottom-up proteomics (5)
SWATH MS (3)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Generation III Array Scanner [Amersham] (2)
LTQ Orbitrap Velos (2)
LTQ Orbitrap Elite (2)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap (1)
Synapt G2 MS (1)
Flow injection analysis MS - negative (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2022 (30)
2021 (11)
2019 (10)
2016 (9)
2018 (9)
2015 (7)
2023 (7)
2014 (6)
2013 (6)
2026 (5)
2020 (4)
2017 (4)
2010 (4)
2011 (3)
2008 (3)
2012 (1)

UNIPROT ID/AC

2A5D_YEAST (1)
2AAA_YEAST (1)
2ABA_YEAST (1)
2NDP_YEAST (1)
3HAO_YEAST (1)
4932.YBR084C-A (1)
4932.YDL191W (1)
4932.YDR025W (1)
4932.YEL054C (1)
4932.YER102W (1)
4932.YER117W (1)
4932.YGR161W-A (1)
4932.YHR055C (1)
4932.YHR218W (1)
4932.YIL018W (1)
4932.YIL069C (1)
4932.YJL221C (1)
4932.YJR145C (1)
4932.YKR059W (1)
4932.YKR094C (1)
4932.YLL066C (1)
4932.YLL067C (1)
4932.YLR467W (1)
4932.YML026C (1)
4932.YML132W (1)
4932.YMR143W (1)
4932.YNL030W (1)
4932.YNL031C (1)
4932.YNL162W (1)
4932.YOL120C (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000090272 (1)
ENSMUSG00000096833 (1)
ENSMUSP00000106991 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141542 (1)

CHEBI ID

CHEBI:140570 (2)
CHEBI:142593 (2)
CHEBI:14314 (2)
CHEBI:15584 (2)
CHEBI:15684 (2)
CHEBI:15721 (2)
CHEBI:15741 (2)
CHEBI:15753 (2)
CHEBI:15999 (2)
CHEBI:16217 (2)
CHEBI:16335 (2)
CHEBI:16414 (2)
CHEBI:16444 (2)
CHEBI:16530 (2)
CHEBI:1656 (2)
CHEBI:16753 (2)
CHEBI:168422 (2)
CHEBI:168648 (2)
CHEBI:168806 (2)
CHEBI:17203 (2)
CHEBI:17290 (2)
CHEBI:17385 (2)
CHEBI:174027 (2)
CHEBI:174200 (2)
CHEBI:17596 (2)
CHEBI:17821 (2)
CHEBI:17859 (2)
CHEBI:179403 (2)
CHEBI:18026 (2)
CHEBI:18047 (2)

Metabolite Name

(R)-2,3-Dihydroxy-isovalerate (2)
(S)-3-Hydroxybutyric acid (2)
1-Hexylglycerol (2)
2,5-Dimethyl-1H-pyrrole (2)
2-(1-Ethoxyethoxy)propanoic acid (2)
3-Hexanone (2)
3-Hydroxy-2-methyl-[S-(R,R)]-butanoic acid (2)
3-Hydroxysuberic acid (2)
3-Mercaptolactic acid (2)
3-Methoxy-4,5-methylenedioxycinnamaldehyde (2)
3-Phospho-D-erythronate (2)
4-Hydroxynonenal (2)
4-Hydroxyphenylpyruvic acid (2)
5-Aminopentanal (2)
5-Hydroxy-4-pentenoic acid d-lactone (2)
Adenosine (2)
Allopurinol (2)
Aminoadipic acid (2)
Aspartyl-Threonine (2)
Citramalic acid (2)
D-Glucose (2)
D-Phenyllactic acid (2)
Dichloroacetate (2)
Dihydrolipoate (2)
Dimethylethanolamine (2)
Endothion (2)
Glyceric acid (2)
Inosine (2)
Mannitol (2)
N-Acetylleucine (2)

First Public Date

2014 (1)

Modelling Approach

Constraint-based model (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (17)
Institute of Bioinformatics , International Technology Park, Bangalore, India (4)
Institute of Bioinformatics, Bangalore, Karnataka, India (4)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (4)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia (2)
Institute of Bioinformatics 7th floor, Discoverer building, International Tech Park, Bangalore 560 066 (2)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry ( lab head ) (2)
9McKusick-Nathans Institute of Genetic Medicine, 10Departments of Biological Chemistry, and 11Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
Cardiovascular Division, King's College London, London, UK (1)
Center for Systems Biology and Molecular Medicine (CSBMM) Yenepoya(Deemed to be University) Mangalore - 575018, India (1)
Center for Systems Biology and Molecular Medicine Yenepoya Research Centre Yenepoya (Deemed to be University) University Road, Deralakatte Mangalore 575018, India (1)
Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore 575018, India (1)
Center for Systems Biology and Molecular Medicine, Yenepoya (Deemed to be University), Mangalore 575018, India (1)
Center for Systems Biology and Molecular Medicine, Yenepoya Research Center, Yenepoya (Deemed to be University), Mangalore, India (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai, India (1)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Molecular Sciences, Macquarie University, Sydney, Australia (1)
Department of Proteomics and Signal Transduction, Max Planck Institute for Biochemistry, Am Klopferspitz 18, D-82152 Martinsried, Germany. (1)
Department of Radiation Medicine Knight Cancer Institute and OHSU 2720 S Moody Avenue Portland, Oregon 97201, USA (1)
Dipyaman Ganguly, IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal , India, 700091 (1)
Dr. Sanjeeva Srivastava, Proteomics Laboratory, Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India (Lab head). (1)
ExxonMobil Research and Engineering Company (1)
German Center for Neurodegenerative Diseases (DZNE) Otfried-Müller-Strasse 23 72076 Tübingen Germany (1)
Graduate College and Department of Neurology Rush University Medical Center (1)
IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology,Kolkata, India (1)
Institue of Bioinformatics Discoverer Building, 7th Floor International Tech Park Whitefield, Bangalore - 560 066 Karnataka, India. (1)
Institute of Bioinformatics , International Technology Park, Bangalore, India. (1)

IsPrivate

False (1)

Classification

fungi (1)

Study type

Transcription profiling by array (21)
Methylation profiling by high throughput sequencing (4)
RNA-seq of coding RNA (3)
Proteomic profiling by mass spectrometer (1)
Antigen profiling (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (154)
2022 (144)
2024 (142)
2020 (133)
2025 (132)
2023 (119)
2019 (81)
2016 (65)
2018 (64)
2017 (62)
2015 (60)
2014 (57)
2013 (47)
2011 (37)
2012 (34)
2010 (21)
2026 (15)
2009 (15)
2008 (10)
2006 (5)
2005 (3)
2007 (2)
2003 (2)
2001 (2)
2000 (1)
1998 (1)
1996 (1)

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S-EPMC2675652 | biostudies-literature

N-Acetyl-β-D-hexosaminidases mediate the generation of paucimannosidic proteins via a putative non-canonical truncation pathway in human neutrophils

We recently discovered that human neutrophils express immunomodulatory glycoproteins carrying unusual and highly truncated paucimannosidic N-glycans (Man1-3GlcNAc2Fuc0-1), but their biosynthesis remains elusive. Guided by the well-characterised truncation pathway in invertebrates and plants in which...

ORGANISM(S): Homo sapiens (Human)

2023-03-11 | PXD027664 | Pride

D‑Blur: A Deep Learning Approach for Mapping Subdiffraction Diffusion with Motion-Blurred Images.

Not available

S-EPMC12728762 | biostudies-literature

Indian ASD probands with 25(OH)D and vitamin D binding protein deficiency exhibited higher severity.

Not available

S-EPMC11336207 | biostudies-literature

Transcriptomic shifts in rice roots in response to Cr (VI) stress

Detailed analysis of genome-wide transcriptome profiling in rice root is reported here, following Cr-plant interaction. Such studies are important for the identification of genes responsible for tolerance, accumulation and defense response in plants with respect to Cr stress. Rice root metabolome an...

ORGANISM(S): Oryza sativa Indica Group

2010-11-11 | E-GEOD-25206 | biostudies-arrayexpress

Inhibition of glycosphingolipid synthesis ameliorates atherosclerosis and arterial stiffness in apolipoprotein E-/- mice and rabbits fed a high-fat and -cholesterol diet.

Not available

S-EPMC4053506 | biostudies-literature

Estimation of D-Arabinose by Gas Chromatography/Mass Spectrometry as Surrogate for Mycobacterial Lipoarabinomannan in Human Urine.

Not available

S-EPMC4669150 | biostudies-literature

A prospective investigation of serum 25-hydroxyvitamin D and risk of lymphoid cancers.

Not available

S-EPMC2677449 | biostudies-literature

Vitamin D Receptor Protects Against Dysbiosis and Tumorigenesis via the JAK/STAT Pathway in Intestine.