Chen Dong D - OmicsDI

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Unknown (3200)
Proteomics (107)
Transcriptomics (52)
Metabolomics (32)
Genomics (14)

Organisms

Homo sapiens (48)
Mus musculus (31)
Bombyx mori (4)
Clostridium acetobutylicum (3)
Ovis aries (3)
Drosophila melanogaster (3)
Caenorhabditis elegans (2)
Rattus norvegicus (2)
Capra hircus (2)
Zea mays (2)
Tardigrada (2)
Lonicera japonica (1)
Larimichthys crocea (1)
Viruses (1)
Cucumis sativus (1)
Oryza sativa Indica Group (1)
Oryza sativa (1)
Oryza sativa Japonica Group (1)
Gallus gallus (1)
Danio rerio (1)
Arabidopsis thaliana (1)
502593 (1)
Aerodramus hirundinaceus (1)
Bos taurus (1)
Brucella suis bv. 1 str. S2 (1)
Escherichia coli (1)
Lamprigera yunnana (1)
Legionella pneumophila subsp. pneumophila Lp02 (1)
Macaca fascicularis fascicularis (1)
Macaca mulatta (1)

Repository

biostudies-arrayexpress (62)
iProX (55)
pride (41)
MetaboLights (32)
MassIVE (6)
EGA (4)
PAXDB (4)
jPOST (1)

Tissue

Cell culture (9)
Liver (6)
Hepatocyte (3)
Whole body (3)
Epithelial cell (2)
Ovary (2)
Blood cell (1)
Blood platelet (1)
Blood serum (1)
Brain (1)
Dentin (1)
Early embryonic cell (1)
Embryo (1)
Embryonic stem cell (1)
Gastric epithelial cell (1)
Heart (1)
Leaf (1)
Macrophage (1)
Placenta (1)
Plant cell (1)
Skin (1)
T cell (1)

Disease

Liver cancer (2)
Cervix carcinoma (1)
Diffuse gastric cancer (1)
Porcine reproductive and respiratory syndrome (1)
Proliferative vasculopathy and hydranencephaly-hydrocephaly syndrome (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (41)
Mass spectrometry (29)
Shotgun proteomics (26)
Affinity purification coupled with mass spectrometry proteomics (5)
Gel-based experiment (4)
Mass spectrometry assay (2)
Bottom-up proteomics (2)
SWATH MS (2)
Top-down proteomics (2)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (12)
Liquid Chromatography MS - negative - reverse phase (12)
Liquid Chromatography MS - positive - hilic (4)
Liquid Chromatography MS - negative (3)
Liquid Chromatography MS - negative - hilic (3)
Illumina HiSeq 2000 (2)
Orbitrap Fusion Lumos (2)
TOF Pegasus HT (LECO) (2)
Gas Chromatography MS - positive (2)
6540 Q-TOF LC/MS (Agilent) (2)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Xevo TQ MS (Waters) (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Nuclear Magnetic Resonance (NMR) (1)
Xevo G2 QTOF (Waters) (1)
Exactive (Thermo Scientific) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2015 (19)
2023 (19)
2021 (17)
2022 (15)
2024 (13)
2020 (13)
2014 (12)
2025 (12)
2012 (10)
2010 (9)
2017 (8)
2019 (8)
2016 (5)
2013 (5)
2026 (4)
2011 (3)
2009 (1)
2008 (1)
2005 (1)
2018 (1)

UNIPROT ID/AC

14331_ORYSJ (1)
14331_SOLLC (1)
14334_ORYSJ (1)
14335_SOLLC (1)
14337_ORYSJ (1)
14337_SOLLC (1)
14338_SOLLC (1)
1433B_SOYBN (1)
2A5K_ORYSJ (1)
2ABA_ORYSJ (1)
3055.EDP00778 (1)
3055.EDP02272 (1)
3055.EDP03640 (1)
3055.EDP03813 (1)
3055.EDP04366 (1)
3847.GLYMA06G11530.1 (1)
3847.GLYMA07G36560.3 (1)
3847.GLYMA08G02375.1 (1)
3847.GLYMA08G11940.1 (1)
3847.GLYMA08G19320.1 (1)
3847.GLYMA09G19800.2 (1)
3847.GLYMA11G00590.2 (1)
3847.GLYMA11G15650.4 (1)
3847.GLYMA11G15700.1 (1)
3847.GLYMA11G15820.1 (1)
3847.GLYMA11G15850.4 (1)
3847.GLYMA11G15890.2 (1)
3847.GLYMA11G16040.1 (1)
3847.GLYMA11G16090.1 (1)
3847.GLYMA11G16190.1 (1)

CHEBI ID

CHEBI:15354 (10)
CHEBI:17368 (10)
CHEBI:30769 (10)
CHEBI:16610 (9)
CHEBI:15741 (9)
CHEBI:7916 (9)
CHEBI:17859 (9)
CHEBI:17895 (9)
CHEBI:16708 (8)
CHEBI:16750 (8)
CHEBI:16467 (8)
CHEBI:21547 (8)
CHEBI:48131 (8)
CHEBI:16704 (8)
CHEBI:32816 (8)
CHEBI:17596 (8)
CHEBI:15756 (8)
CHEBI:24266 (7)
CHEBI:16709 (7)
CHEBI:18257 (7)
CHEBI:9300 (7)
CHEBI:30794 (7)
CHEBI:17148 (7)
CHEBI:6650 (7)
CHEBI:28790 (7)
CHEBI:17154 (7)
CHEBI:16865 (7)
CHEBI:35581 (7)
CHEBI:27823 (7)
CHEBI:18050 (7)

Metabolite Name

Hypoxanthine (8)
L-Arginine (7)
Betaine (6)
Choline (6)
Citric acid (6)
Spermidine (6)
Adenine (6)
Cytidine (6)
Guanosine (6)
Sucrose (6)
Pyruvic acid (5)
Ornithine (5)
Succinic acid (5)
Pantothenic acid (5)
Xanthosine (5)
Pipecolic acid (5)
Suberic acid (5)
Sarcosine (5)
Glutaric acid (5)
Azelaic acid (5)
Xanthine (5)
Uridine (5)
Creatinine (5)
L-Valine (5)
L-Isoleucine (5)
Inosine (5)
Agmatine (4)
N-Acetyl-D-glucosamine (4)
D-Galactose (4)
L-Cystine (4)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (18)
ChIP-seq (6)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Other (1)
MicroRNA profiling by array (1)
DNA-seq (1)

Release Date

2025 (525)
2022 (443)
2024 (427)
2023 (419)
2021 (329)
2020 (235)
2019 (185)
2017 (125)
2018 (122)
2015 (113)
2016 (87)
2014 (63)
2026 (60)
2012 (34)
2013 (31)
2011 (23)
2010 (17)
2009 (7)
2006 (4)
2008 (3)
2007 (3)
2005 (2)
2003 (2)
2002 (2)
2004 (1)

Lab affiliation

Shandong Normal University (2)
State Key Lab of Reproductive Medicine, Nanjing Medical University (2)
1. Nephrology Department of Guilin No. 924 Hospital, Guangxi Key laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research, 541002, Guilin, Guangxi, People’s Republic of China. 2. Clinical Medical Research Center, the Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), 518020, Shenzhen, Guangdong, People’s Republic of China. (1)
Beijing Institute of Genomics, Chinese Academy of Sciences (1)
Bengbu medical college (1)
Central Laboratory, Dongguan Binhaiwan Hospital, Guangdong Province, China (1)
China Agricultural University, 100193, China (1)
Department of Chemical and Biomolecular Engineering, The Hong Kong University of Science and Technology (1)
Department of Clinical Laboratory, The Affiliated Wuxi Matemity and Child Health Care Hospital of Nanjing Medical University (1)
Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology (1)
Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, (1)
Department of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University; Key Laboratory of Carcinogenesis and Cancer Invasion of Ministry of Education, Key Laboratory of Medical Epigenetics and Metabolism, Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China (1)
Department of Urology, Qilu Hospital of Shandong University, Jinan, China (1)
EDyP (1)
Fourth Military Medical University (1)
Institute of Computing Technology, CAS (1)
Institute of Plant Protection, Shandong Academy of Agricultural Sciences, P.R.China (1)
Key Laboratory of Marine Biogenetics and Resources, Third Institute of Oceanography, State Oceanic Administration, Xiamen 361005, Fujian, P.R. China (1)
Koch Institute for Integrative Cancer Research at Massachusetts Institute of Technology (1)
Laboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China (1)
National Yang-Ming University Proteomics Research Center (R648), Taipei, 112 Taiwan (ROC) (1)
National Yang-Ming University Proteomics Research Center,Taiwan (1)
Nephrology Department of Guilin No.924 Hospital, Guangxi Key Laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research; Clinical Medical Research Center, The Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital) (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore 575018, India (1)
School of Bioengineering, Dalian Polytechnic University (1)
School of Medicine, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. (1)
Soochow University (1)
State Key Laboratory Cultivation Base for Cell Differentiation Regulation, Henan Normal University, Xinxiang, Henan Province, China (1)
State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin, People's Republic of China; College of Pharmacy, Nankai University, Tianjin, People's Republic of China. (1)
State Key Laboratory of Molecular Developmental Biology, Institute of Genetics an Developmental Biology, Chinese Academy of Sciences (1)

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Identification of specific proteins and metabolic networks associated with sucrose accumulation in sugarcane

The rate of improvement of sugar content in sugarcane remains low for decades worldwide. Our previous transcriptome studies provided an atlas of sucrose accumulation-related gene expression but little is known about proteins involved. Here this knowledge gap is addressed by a proteomic analysis of e...

ORGANISM(S): Saccharum spp. complex hybrid

2022-08-12 | PXD024569 | Pride

Quantitative analysis to the subcellular proteome in response to cathepsin D knockdown in HeLa cells

Cathepsin D is reportedly to be closely associated with tumor development, migration and invasion, but its pathological mechanism is not fully elucidated. We aimed to evaluate phenotypic changes and molecular events in response to cathepsin D knockdown. Lowering endogenous cathepsin D abundance (CR)...

ORGANISM(S): Homo sapiens (Human)

2015-12-17 | PXD002844 | Pride

Cytosol Lysosome Silac Nucleus Subcellular fractionation

Evolutionary analysis of 3 isolates of Seneca Valley virus from a single pig farm.

Not available

S-EPMC8978293 | biostudies-literature

An isocorydine derivative (d-ICD) inhibits drug resistance by downregulating IGF2BP3 expression in hepatocellular carcinoma.

Not available

S-EPMC4694821 | biostudies-literature

Seneca Valley virus induces proinflammatory cytokine and chemokine response in vitro.

Not available

S-EPMC10069161 | biostudies-literature

New Terpenoids from Potentilla freyniana Bornm. and Their Cytotoxic Activities.

Not available

S-EPMC9227482 | biostudies-literature

Arabidopsis De-etiolated 1 Represses Photomorphogenesis by Positively Regulating Phytochrome Interacting Factors in the Dark

Arabidopsis seedlings undergo photomorphogenic development even in darkness when the function of De-etiolated 1 (DET1), a repressor of photomorphogenesis, is disrupted. Our results indicate that DET1 directly interacts with a group of transcription factors known as the phytochrome-interacting factor...

ORGANISM(S): Arabidopsis thaliana

2015-03-19 | E-GEOD-60835 | biostudies-arrayexpress

Angelica Sinensis Polysaccharide Prevents Hematopoietic Stem Cells Senescence in D-Galactose-Induced Aging Mouse Model.

Not available

S-EPMC5405396 | biostudies-literature

Genomic and transcriptome profiling identified both human and HBV genetic variations and their interactions in Chinese hepatocellular carcinoma.

Not available

S-EPMC4664659 | biostudies-literature

Characterization and expression of sweetfish (Pleco glossus altivelis) cathepsin D.

Not available

S-EPMC5031676 | biostudies-literature

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3405 Results

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