Chen S C SC - OmicsDI

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Unknown (1508)
Transcriptomics (76)
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Homo sapiens (134)
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Organisms

Yersinia pestis (1)
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Repository

biostudies-arrayexpress (97)
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pride (42)
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Tissue

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Disease

Not Available (5)
Breast cancer (5)
Disease free (2)
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Inflammation (1)
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Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (42)
Shotgun proteomics (23)
Mass spectrometry (10)
Gel-based experiment (7)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (4)
Illumina HiSeq 2000 (3)
Top-down proteomics (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
ILLUMINA, Illumina HiSeq 2500 (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500, ILLUMINA (1)
NMR spectroscopy (1)
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Proteogenomics (1)
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Instrument Platform

Instrument (5)
Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - positive - reverse phase (5)
Illumina HiSeq 2000 (3)
Illumina Genome Analyzer IIx (2)
Illumina HiSeq 4000 (2)
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MS Imaging - (2)
Axon- GenePix4000B (1)
NextSeq 550 (1)
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Publication Date

2012 (23)
2022 (19)
2021 (14)
2013 (14)
2015 (13)
2011 (13)
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2010 (10)
2020 (10)
2019 (8)
2014 (8)
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2016 (6)
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2018 (4)
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2009 (3)
2005 (3)
2006 (2)
2017 (2)

UNIPROT ID/AC

14331_ORYSJ (1)
14331_SOLLC (1)
14331_SOLTU (1)
14332_SOLTU (1)
14334_ORYSJ (1)
14335_SOLLC (1)
14335_SOLTU (1)
14337_ORYSJ (1)
14337_SOLLC (1)
14338_SOLLC (1)
1433B_SOYBN (1)
2A5K_ORYSJ (1)
2ABA_ORYSJ (1)
3055.EDP00778 (1)
3055.EDP02272 (1)
3055.EDP03640 (1)
3055.EDP03813 (1)
3055.EDP04366 (1)
3847.GLYMA06G11530.1 (1)
3847.GLYMA07G36560.3 (1)
3847.GLYMA08G02375.1 (1)
3847.GLYMA08G11940.1 (1)
3847.GLYMA08G19320.1 (1)
3847.GLYMA09G19800.2 (1)
3847.GLYMA11G00590.2 (1)
3847.GLYMA11G15650.4 (1)
3847.GLYMA11G15700.1 (1)
3847.GLYMA11G15820.1 (1)
3847.GLYMA11G15850.4 (1)
3847.GLYMA11G15890.2 (1)

CHEBI ID

CHEBI:131887 (2)
CHEBI:133094 (2)
CHEBI:15676 (2)
CHEBI:15891 (2)
CHEBI:169191 (2)
CHEBI:171824 (2)
CHEBI:27732 (2)
CHEBI:34292 (2)
CHEBI:35549 (2)
CHEBI:5461 (2)
CHEBI:87248 (2)
CHEBI:88866 (2)
CHEBI:10001 (1)
CHEBI:100147 (1)
CHEBI:10032 (1)
CHEBI:10037 (1)
CHEBI:10049 (1)
CHEBI:10072 (1)
CHEBI:10093 (1)
CHEBI:101085 (1)
CHEBI:10111 (1)
CHEBI:10136 (1)
CHEBI:102216 (1)
CHEBI:10353 (1)
CHEBI:107658 (1)
CHEBI:10782 (1)
CHEBI:109895 (1)
CHEBI:1109 (1)
CHEBI:1135 (1)
CHEBI:113542 (1)

Metabolite Name

Adenine (2)
Adenosine (2)
Agmatine (2)
Amphetamine (2)
Bufotalin (2)
Caffeine (2)
Carnosol (2)
Creatine (2)
Creatinine (2)
Daunorubicin (2)
Dodemorph (2)
Galactose (2)
Glutamine (2)
Hypoxanthine (2)
Indican (2)
Indinavir (2)
Lactose (2)
Osthole (2)
Phytosphingosine (2)
Porphobilinogen (2)
Threonine (2)
Thymol (2)
Tyrosine (2)
((+-))5,6-DHET (1)
(+)-12-hydroxy-9Z-hexadecenoic acid (1)
(+)-6-aminopenicillanic acid (1)
(+)-Praeruptorin A (1)
(+-)-Carbovir (1)
(+/-)18-HEPE (1)
(-)-Epiafzelechin (1)

First Public Date

2014 (2)
2022 (1)

Modelling Approach

Constraint-based model (1)

Lab affiliation

University of Alabama at Birmingham, Department of Pathology, Division MCP, O'Neal Comprehensive Cancer Center (3)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (2)
Beijing University of Chinese Medicine, School of Traditional Chinese Medicine, Attending Physician, Assistant Researcher (1)
Beijing, You An Men Wai Xi Tou Tiao No.10 Capital Medical University, Beijing Laboratory of Oral Health (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, The Netherlands; Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht (1)
Cancer Research UK and Medical Research Council Oxford Institute for Radiation Oncology, Department of Oncology, University of Oxford, Oxford OX3 7DQ, UK (1)
Center for Cell and Gene Therapy Department of Neurosurgery Baylor College of Medicine Houston, Texas, USA (1)
Center for Genomic Regulation and University Pompeu Fabra (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118, USA National Emerging Infectious Diseases Laboratories (NEIDL), Boston University, Boston, MA 02118, USA (1)
Department of Biology, Microbial Ecology and Limnoc Microbiology, University of Konstanz (1)
Department of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA. (1)
Department of Hematology, The Affiliated Cancer Hospital of Zhengzhou University & Henan Cancer Hospital, Zhengzhou, China (1)
Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, IN47907 (1)
Department of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill (1)
Department of Molecular Medicine, The Scripps Research Institute (1)
Department of Plasma Proteins, Sanquin Research, Amsterdam, the Netherlands (1)
Department of Structural Biology, St. Jude Children’s Research Hospital, Memphis, TN 38105, USA Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Dept. Isotope Biogeochemistry Helmholtz Center for Environmental Research - UFZ Leipzig, Germany (1)
Dept. of Orthopaedics and Traumatology The Chinese University of Hong Kong, Hong Kong, China (1)
Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
Institute of Chemistry (1)
Institute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan (1)
Institute of Molecular Biology, Academia Sinica, Taiwan (1)
Laboratory of Medical Chemistry, GIGA-Stem Cells, Interdisciplinary Cluster for Applied Genoproteomics, Faculty of Medicine, University of Liège, CHU, Sart-Tilman, Liège, 4000, Belgium (1)
Laboratory of Medical Chemistry, Interdisciplinary Cluster for Applied Genoproteomics (GIGA) Stem Cells (1)
Nanjing Medical University (1)
Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark (1)
Otto Krayer Professor Department of Systems Biology Head of the Harvard Program in Therapeutic Sciences - HiTS Harvard Medical School (1)
Sanquin Research, department of Plasma Proteins, Plesmanlaan 125, 1066 CX Amsterdam, the Netherlands (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (21)
ChIP-seq (14)
Methylation profiling by high throughput sequencing (4)
DNA-seq (3)
Unknown experiment type (2)
Genotyping by array (2)
Comparative genomic hybridization by array (2)
RNA-seq of non coding RNA (2)
Transcription profiling by high throughput sequencing (1)
Transcription profiling by SAGE (1)
Human - Single-cell sequencing (1)
High-throughput sequencing (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2023 (195)
2022 (171)
2024 (167)
2025 (162)
2021 (158)
2020 (106)
2019 (82)
2015 (74)
2016 (73)
2018 (67)
2012 (62)
2017 (52)
2014 (51)
2013 (47)
2011 (35)
2010 (31)
2026 (27)
2009 (20)
2008 (12)
2005 (5)
2006 (4)
2007 (2)
2000 (1)
1998 (1)

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Pseudomonas sp. Strain 273 Incorporates Organofluorine into the Lipid Bilayer during Growth with Fluorinated Alkanes

Anthropogenic organofluorine compounds are recalcitrant, globally distributed, and a human health concern. Although rare, natural processes synthesize fluorinated compounds, and some bacteria have evolved mechanisms to metabolize organofluorine compounds. Pseudomonas sp. strain 273 grows with...

2022-06-06 | MTBLS3893 | MetaboLights

Anomalous excitonic phase diagram in band-gap-tuned Ta₂Ni(Se,S)₅.

Not available

S-EPMC10657405 | biostudies-literature

Investigations of the {ReO} core: A '2+2' complex from bidentate and potentially trident ligands: [ReO(η-HOC(6)H(4)-2-CH(2)NC(6)H(4)S)(η-SC(5)H(4)N)(PPh(3))].

Not available

S-EPMC3103089 | biostudies-literature

Effects of hypothermia on gene expression in zebrafish gills

Ectothermic vertebrates are different from mammals that are sensitive to hypothermia and they have to maintain core temperature for survival. Why and how ectothermic animals can survive, grow and reproduce in low temperature have been for a long time a scientifically challenging and important inquir...

ORGANISM(S): Danio rerio

2010-06-20 | E-GEOD-7853 | biostudies-arrayexpress

Restriction of LINE1 activity by RNAi correlates with mouse ES cell differentiation

Long interspersed elements 1 (LINE-1 or L1) are retrotransposons that dominate the mouse genomic landscape, and are expressed in Embryonic Stem Cells (ESCs), germ cells, and during early development. Based on clear precedents in plants and fission yeast, we investigated in this study a role for RNAi...

ORGANISM(S): Mus musculus

2013-12-11 | E-GEOD-43110 | biostudies-arrayexpress

Transcriptional landscape of Candida parapsilosis

We used next generation sequencing (RNA-seq) to determine the transcriptional profile of C. parapsilosis growing in several conditions including different media, temperatures and oxygen concentrations. We have 37 Samples representing BMW and YPD media, 1% and 21% oxygen, 30 and 37 degree celsius tem...

ORGANISM(S): Candida parapsilosis

2011-11-30 | E-GEOD-32714 | biostudies-arrayexpress

Evolution of self-compatibility by a mutant S<sub>m</sub>-RNase in citrus.

Not available

S-EPMC7030955 | biostudies-literature

Proteotoxicity caused by perturbed protein complexes underlies hybrid incompatibility

Dobzhansky-Muller incompatibilities represent a major driver of reproductive isolation between species. They are caused when two or more interacting components encoded by alleles from different species cannot function properly when mixed. At incipient stages of speciation, complex incompatibilities ...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2022-07-05 | PXD028358 | Pride

Koningipyridines A and B, two nitrogen-containing polyketides from the fungus Trichoderma koningiopsis SC-5.

Not available

S-EPMC10784257 | biostudies-literature

Record high T_c element superconductivity achieved in titanium.

Not available

S-EPMC9478155 | biostudies-literature

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