Chiba A A - OmicsDI

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Unknown (11371)
Genomics (377)
Transcriptomics (49)
Proteomics (36)
Models (5)
Metabolomics (5)
Multiomics (1)

Organisms

Homo sapiens (55)
Mus musculus (18)
Rattus norvegicus (6)
Escherichia coli (6)
Solanum lycopersicum (3)
Oryza sativa (2)
Rattus (1)
Swertia japonica (1)
Lonicera japonica (1)
Arabidopsis thaliana (1)
Oryza sativa Japonica Group (1)
Danio rerio (1)
Rattus rattus (1)
cellular organisms (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Entamoeba histolytica (1)
Xenopus laevis (1)

Organisms

Homo sapiens (136)
Mus musculus (111)
urine metagenome (5)
Rattus norvegicus (5)
human gut metagenome (4)
seawater metagenome (4)
Semisulcospira reiniana (3)
Aspergillus fumigatus (3)
metagenome (3)
soil metagenome (3)
Arabidopsis thaliana (3)
Hemicentrotus pulcherrimus (2)
Aspergillus fumigatus Af293 (2)
mouse gut metagenome (2)
Geobacter sp. OR-1 (1)
Aspergillus fumigatus var. fumigatus (1)
Actinomyces sp. Chiba101 (1)
Anaeromyxobacter sp. PSR-1 (1)
Parabrotula tanseimaru (1)
Paraburkholderia kururiensis (1)
Madurella pseudomycetomatis (nom. inval.) (1)
Glomeromycotina sp. (1)
Madurella fahalii (1)
Iodidimonas nitroreducens (1)
Peltogasterella gracilis (1)
unclassified Intrasporangium (1)
Aconitum carmichaelii (1)
Rhododendron hyugaense (1)
Rhododendron amagianum (1)
Xylariales sp. No.14919 (1)

Repository

ENA (365)
biostudies-arrayexpress (48)
jPOST (21)
pride (14)
EGA (9)
BioModels (5)
geo (4)
MetaboLights (4)
MassIVE (1)
MetabolomicsWorkbench (1)

Tissue

Epithelial cell (8)
Cultured cells (1)
Brain (1)
Egg (1)
Egg cell (1)
Sperm (1)

Disease

Diabetes mellitus (1)
Cancer (1)
Alzheimer's disease (1)
Frontotemporal dementia (1)

Technology Type

Mass Spectrometry (15)
Affinity purification coupled with mass spectrometry proteomics (10)
Mass spectrometry (4)
Shotgun proteomics (4)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
Illumina HiSeq 2000, Infinium HumanMethylation450 BeadChip (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
ESI (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 1000 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap XL (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
QqTOF Compact (Bruker) (1)
TSQ Quantum Access MAX (Thermo Scientific) (1)

Publication Date

2023 (13)
2017 (8)
2013 (8)
2011 (8)
2022 (8)
2024 (7)
2014 (6)
2012 (6)
2016 (5)
2015 (5)
2010 (5)
2008 (4)
2009 (3)
2025 (3)
2020 (2)
2026 (2)
2021 (2)
2005 (1)
2018 (1)

UNIPROT ID/AC

P62755 (3)
Q63484 (3)
P07522 (2)
Q9WTS1 (2)
D3ZV21 (1)
P07379 (1)
P09811 (1)
P25427 (1)
P35570 (1)
P35739 (1)
P42346 (1)
P47197 (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:17115 (3)
CHEBI:15429 (2)
CHEBI:15725 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:15901 (2)
CHEBI:16010 (2)
CHEBI:16119 (2)
CHEBI:16449 (2)
CHEBI:16551 (2)
CHEBI:16610 (2)
CHEBI:16634 (2)
CHEBI:16765 (2)
CHEBI:16828 (2)
CHEBI:16865 (2)
CHEBI:16934 (2)
CHEBI:16958 (2)
CHEBI:17053 (2)
CHEBI:17148 (2)
CHEBI:17327 (2)
CHEBI:15361 (1)
CHEBI:16452 (1)
CHEBI:17234 (1)
CHEBI:24996 (1)
CHEBI:28087 (1)
CHEBI:29042 (1)
CHEBI:33699 (1)
CHEBI:40595 (1)
CHEBI:49603 (1)

Metabolite Name

Aconitic acid, cis- (3TMS) (1)
Alanine (2TMS) (1)
Alanine, 3-cyano-, L- (2TMS) (1)
Alanine, beta- (3TMS) (1)
Allantoin (1)
Arabinose, D- (1MEOX) (4TMS) (1)
Asparagine, DL- (3TMS) (1)
Aspartate (1)
Butyric acid, 2-amino-, DL- (2TMS) (1)
Butyric acid, 4-amino- (3TMS) (1)
Citric acid (4TMS) (1)
Cystine, L- (4TMS) (1)
Dihydrouracil (2TMS) (1)
Fructose, D- (1MEOX) (5TMS) (1)
Fructose-6-phosphate (1)
Fumaric acid (2TMS) (1)
Galactinol (9TMS) (1)
Galacturonic acid, D- (1MEOX) (5TMS) (1)
Glucose (1)
Glucose-6-phosphate (1MEOX) (6TMS) (1)
Glucuronic acid-e-lactone, DL- (MEOX) (3TMS) (1)
Glutamate (1)
Glutamine, DL- (3TMS) (1)
Glutaric acid (2TMS) (1)
Glutaric acid, 2-oxo- (1MEOX) (2TMS) (1)
Glyceric acid, DL- (3TMS) (1)
Glycerol (3TMS) (1)
Glycine (3TMS) (1)
Glycolic acid (2TMS) (1)
Hexadecanoate (1)

First Public Date

2014 (47)
2025 (46)
2024 (39)
2022 (39)
2026 (35)
2018 (31)
2023 (29)
2021 (20)
2019 (20)
2017 (19)
2016 (18)
2020 (14)
2015 (6)
2013 (2)

Modelling Approach

Ordinary differential equation model (5)

Lab affiliation

University of Bristol (7)
CINVESTAV Department of Biochemistry (1)
Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Chiba, Japan. (1)
Department of Biochemistry, Sapporo Medical University School of Medicine (1)
Department of Neuropathology, Medical Research institute and Center for Brain Integration Research, Tokyo Medical and Dental University, Japan (1)
Division of Cancer Cell Biology, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan (1)
Hoshi University, Japan (1)
Lund University (1)

IsPrivate

False (5)

Classification

fungi (9)
bacteria (3)

Study type

Transcription profiling by array (34)
Comparative genomic hybridization by array (4)
RNA-seq of coding RNA (3)
Genotyping by array (2)
Transcription profiling by SAGE (1)
MicroRNA profiling by high-throughput sequencing (1)
Transcription profiling by tiling array (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2022 (1237)
2025 (1225)
2023 (1158)
2021 (1138)
2024 (999)
2020 (868)
2019 (726)
2018 (698)
2017 (589)
2016 (469)
2015 (435)
2014 (376)
2013 (267)
2012 (197)
2026 (192)
2011 (174)
2010 (137)
2008 (104)
2009 (95)
2007 (61)
2006 (57)
2004 (55)
2005 (50)
2003 (31)
2002 (21)
2001 (20)
2000 (14)
1998 (12)
1999 (10)
1997 (4)

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Rhizobium strain:Chiba-1

Rhizobium sp. Chiba-1 genome sequence

PRJDB15978 | ENA

SETD1A regulates transcriptional pause release of heme biosynthesis genes in leukemia

Not available

ORGANISM(S): Homo sapiens

ST002323 | MetabolomicsWorkbench

A systems analysis with “simplified source-sink model” reveals metabolic reprogramming in a pair of source-to-sink organs during early fruit development in tomato by LED light treatments

Tomato (Solanum lycopersicum) is a model crop for studying development regulation and ripening in flesh fruits and vegetables. Supplementary light to maintain the optimal light environment can lead to the stable growth of tomatoes in greenhouses and areas without sufficient daily light integral. Tec...

2018-09-27 | MTBLS699 | MetaboLights

Second phase Chiba study of mother and child health (C-MACH): Japanese birth cohort study with multiomics analyses.

Not available

S-EPMC11628962 | biostudies-literature

Pharmacological characterization of [³H]CHIBA-3007 binding to glycine transporter 1 in the rat brain.

Not available

S-EPMC3121759 | biostudies-literature

Health outcomes of fruit juice and fruity beverage: a comparative analysis of gut microbiota and metabolomics in rats (Lipidomics assay)

BACKGROUND: Diet is foods and drinks regularly consumed, and its regulation is complicated. It is necessary to obtain a practical understanding of which foods and drinks contribute to health and well-being and which are insalubrious. Clear evidence shows that a high intake of fru...

2022-08-24 | MTBLS4108 | MetaboLights

A Novel Rhizobium sp. Chiba-1 Strain Exhibits a Host Range for Nodule Symbiosis in Lotus Species.

Not available

S-EPMC10728632 | biostudies-literature

Genetic analysis of noroviruses in Chiba Prefecture, Japan, between 1999 and 2004.

Not available

S-EPMC1234054 | biostudies-literature

Cohort profile: Sub-cohort study on the second phase of the Chiba Study of Mother and Child Health (C-MACH), Japan.

Not available

S-EPMC12918694 | biostudies-literature

Urban Microbiomes in Narita, Chiba, Japan: Shotgun Metagenome Sequences of a Train Station.

Not available