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ProteomicsA ChIRP-MS analysis of HOTAIR in HeLa
We employed ChIRP in combination with proteomic strategy to systematically discover HOTAIR-interacting proteins. Three independent biological replicates of ChIRP-MS experiment were performed, alongside negative controls.
ORGANISM(S): Homo sapiens (Human) 
2021-07-09 | PXD015546 | Pride
Hotair hela chirp-ms 
ProteomicsXIST CHIRP-MS in GM12878 and K562 cell line
Identification of cell type-specific XIST co-factors during maintenance of X chromosome inactivation by XIST CHIRP-MS
ORGANISM(S): Homo sapiens (Human) 
2021-03-08 | PXD023516 | Pride
Chirp-ms 
GenomicsChIRP-MS RNA-seq during SARS-CoV-2 infection
ChIRP-MS RNA-seq during SARS-CoV-2 infection
PRJNA704330 | ENA
ProteomicsChIRP-MS of long non-coding RNA HOTAIR
Accumulating evidence highlights the role of long non-coding RNAs (lncRNA) in cellular homeostasis, and their dysregulation in disease settings. Most lncRNAs function by interacting with proteins or protein complexes. While several orthogonal methods have been developed to identify these proteins, e...
ORGANISM(S): Homo sapiens (Human) 
2022-02-15 | PXD029057 | Pride
Lncrna Hotair Chirp-ms 
TranscriptomicsChIRP-MS RNA-seq during SARS-CoV-2 infection
RNA-seq data of RNAs pulled down with the SARS-CoV-2 viral RNA after formaldehyde crosslinking (ChIRP-MS)
ORGANISM(S): Chlorocebus sabaeus Homo sapiens 
2021-02-24 | GSE167336 | GEO
ProteomicsProteins bound to BTBD7_hsa_circ_0000563 in coronary artery disease
We aimed to clarify the possible functional role of hsa_circ_0000563 in coronary artery disease. Therefore, the ChIRP-MS was conducted to explore the interaction between BTBD7_hsa_circ_0000563 and proteins on a genomic scale in human peripheral blood mononuclear cell (PBMC). This project is the raw ...
ORGANISM(S): Homo sapiens (Human) 
2023-03-11 | PXD033196 | Pride
Chirp-ms Btbd7_hsa_circ_0000563 Proteins Coronary artery disease 
ProteomicsOptimization of an RNA-centric approach searching for RNA-interacting proteins in Arabidopsis thaliana
The number of methods used to study RNA-protein interactions in plants is currently relatively limited. The RNA-centric approach, starting with RNA of interest, brings several difficulties, especially when the RNA belongs to the less abundant RNAs. These methods for identification of RNA-interactin...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-05-22 | PXD046839 | Pride
Arabidopsis thaliana Telomerase Rna Rna-centric methods Rna-protein interactions Chirp-ms Telomerase rna Lc-ms/ms 
ProteomicsChIRP-MS dataset generated from Prohibitin 2 orchestrating transcription of long noncoding RNA and coding gene to accelerate tumorigenesis
The spatial co-presence of aberrant long non-coding RNAs (lncRNAs) and abnormal coding genes contributes to malignancy development in various tumors. However, precise coordinated mechanisms underlying this phenomenon in tumorigenesis remains incompletely understood. Here, we show that Prohibitin 2 (...
ORGANISM(S): Homo sapiens (Human) 
2024-09-05 | PXD055094 | Pride
Human Melanoma cell Chirp-ms 
ProteomicsDiscovery of RUF6 ncRNA interacting proteins involved in P. falciparum immune evasion
RUF6 is a ncRNA gene family that is transcribed by RNA Polymerase III but actively regulates the Pol II-transcribed var virulence gene family. Understanding how RUF6 ncRNA connect to downstream effectors is lacking. We developed an RNA-directed proteomic discovery (ChIRP-MS) protocol to identify in ...
ORGANISM(S): Plasmodium falciparum (isolate 3D7) 
2022-11-15 | PXD036801 | Pride
Var genes Malaria virulence Ruf6 ncrna Plasmodium falciparum Antigenic variation 
ProteomicsThe role of Xist-mediated Polycomb recruitment in the initiation of X-chromosome inactivation
The role of Xist-mediated Polycomb recruitment in the initiation of X-chromosome inactivation
ORGANISM(S): Mus musculus (Mouse) 
2019-08-29 | PXD014287 | Pride
Mouse Xist Chirp-ms 
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