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MetabolomicsChitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle.
Marine picocyanobacteria Prochlorococcus and Synechococcus, the most abundant photosynthetic cells in the oceans, are generally thought to have a primarily single-celled and free-living lifestyle. However, while studying the ability of picocyanobacteria to supplement photosynthetic car...
2024-02-21 | MTBLS5229 | MetaboLights
TranscriptomicsTranscriptional analysis of wild-type and delta_dasR mutant of Streptomyces coelicolor grown in soil amended with chitin
Genome-wide microarray analysis was performed using RNA extracted from soil cultures of Streptomyces coelicolor A3(2) in the presence or absence of chitin. The vast majority of genes in chitin and amino sugar metabolism, as well as many other genes for carbon and energy, nitrogen and sulfur metaboli...
ORGANISM(S): Streptomyces coelicolor A3(2) 
2012-11-07 | E-GEOD-39164 | biostudies-arrayexpress
TranscriptomicsThe Vibrio cholerae chitin utilization program
This SuperSeries is composed of the following subset Series: GSE3101: Chitin oligosaccharide induction GSE3102: Crab shell attachment GSE3103: Chitin sensor Abstract: Chitin, an insoluble polymer of GlcNAc, is an abundant source of carbon, nitrogen, and energy for marine microorganisms. Microarray ...
ORGANISM(S): Vibrio cholerae 
2006-03-07 | E-GEOD-4388 | biostudies-arrayexpress
TranscriptomicsChitin oligosaccharide induction
Strain N16961 grown in M9 + 0.5 % lactate to OD 0.2. Culture was split and one part added 0.6 mM of indicated chitin oligosaccharide. Samples was isolated after 30 and 60 min. cDNA was prepared from 2 ug RNA and labeled with Cy3 (no induction) and Cy5 (induction with chitin oligosaccharide). Samples...
ORGANISM(S): Vibrio cholerae 
2005-08-11 | E-GEOD-3101 | biostudies-arrayexpress
ProteomicsChitin degradation machinery and secondary metabolite profiles in the marine bacterium Pseudoalteromonas rubra S4059
Genome mining of pigmented Pseudoalteromonas has revealed a large potential for production of bioactive compounds, both hydrolytic enzymes and secondary metabolites and the purpose of the present study was to explore this bioactivity potential in a potent antibiotic and enzyme producer, Pseudoaltero...
ORGANISM(S): Pseudoalteromonas rubra 
2021-03-11 | PXD023249 | Pride
Lc-ms Marine bacteria Proteome Secretome 
GenomicsEcological functions of agricultural soil bacteria and microeukaryotes in chitin degradation – a case study
Ecological functions of agricultural soil bacteria and microeukaryotes in chitin degradation – a case study
PRJEB14831 | ENA
TranscriptomicsTranscription profiling of Vibrio cholerae N16961 grown in M9 + 0.5 % lactate to OD 0.2, culture was split and one part added 0.6 mM of indicated chitin oligosaccharide
Strain N16961 grown in M9 + 0.5 % lactate to OD 0.2. Culture was split and one part added 0.6 mM of indicated chitin oligosaccharide. Samples was isolated after 30 and 60 min. cDNA was prepared from 2 ug RNA and labeled with Cy3 (no induction) and Cy5 (induction with chitin oligosaccharide). Samples...
ORGANISM(S): Vibrio cholerae 
2005-07-21 | E-SMDB-2237 | biostudies-arrayexpress
ProteomicsSecretome Analysis of Pseudoalteromonas flavipulchra DSM 14401
Crystalline chitin is a kind of high molecular-weight polymers which is difficult to degrade. N-acetylglucosamine and chitooligosaccharides (COSs) are important agriculture, medicine, cosmetics and food resources. Conversion of crystalline chitin to GlcNAc and COSs using recombinant chitinases is an...
ORGANISM(S): Pseudoalteromonas flavipulchra NCIMB 2033 = ATCC BAA-314 
2022-04-04 | PXD030600 | Pride
Pseudoalteromonas flavipulchra Chitin degradation Secretome 
ProteomicsChitin degradation by Vibrio sp 1A01
Proteomes of Vibrio sp. 1A01 exponentially growing on various carbon sources as well as on chitin. Chitin samples contain planktonic cells, particle-associated proteins and excreted proteins.
ORGANISM(S): Vibrio Sp. 1a01 (ncbitaxon:314742) 
2022-05-19 | MSV000089499 | MassIVE
ProteomicsGrowth of Aeromonas on Glucose and Chitin
Aeromonas are ubiquitous inhabitants of both natural and anthropogenic aquatic ecosystems. Occasionally, Aeromonas also grows in drinking water distribution systems, which is highly undesired due to the pathogenicity of some members of this genus. The growth of Aeromonas in such highly oligotrophic ...
ORGANISM(S): Aeromonas rivuli Aeromonas bestiarum 
2024-12-12 | PXD047459 | Pride
Aeromonas Chitin degradation Shotgun proteomics 
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