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ProteomicsThe Eucalyptus grandis chloroplast proteome: leaf development and seasonal variations
Chloroplast is a subcellular compartment in which solar radiation is used to generate simple sugar compounds in a complex process named photosynthesis. It is very sensitive to environmental fluctuations and your development is intimately related with the development of the whole plant at different s...
ORGANISM(S): Eucalyptus grandis 
2022-10-28 | PXD029004 | Pride
Season Leaf development Proteomics Chloroplast Eucalyptus 
TranscriptomicsThe primary transcriptome of barley (Hordeum vulgare L.) chloroplasts
Gene expression in plastids of higher plants is dependent on two different transcription machineries, a plastid-encoded bacterial-type RNA polymerase (PEP) and a nuclear-encoded phage-type RNA polymerase (NEP), which recognize distinct types of promoters. The division of labor between PEP and NEP du...
ORGANISM(S): Hordeum vulgare 
2011-11-23 | E-GEOD-33773 | biostudies-arrayexpress
ProteomicsThe FtsH-inactive Protein TSL2/FtsHi5 Is Required for Chloroplast Development and Proteostasis at Low Ambient Temperature in Arabidopsis thaliana
Chloroplasts are indispensable for higher plants. The growth and development of plants are very sensitive to environmental temperature changes, and chloroplast development is also regulated by adverse environmental temperatures. However, the molecular mechanism of how plants coordinate chloroplast d...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-01-21 | PXD030185 | Pride
Ftsh Arabidopsis thaliana Chloroplast proteome Tmt Chloroplast biogenesis 
TranscriptomicsInfluence of non-chloroplast genomes rearangements on chloroplast transcription in cucumber
The experiment was conducted to examine the influence of non-chloroplast genomes rearangements on chloroplast transcription in cucumber
ORGANISM(S): Cucumis sativus 
2011-09-10 | E-MEXP-3233 | biostudies-arrayexpress
TranscriptomicsTomato (Solanum lycopersicum) plants overexpressing cryptochrome 2 reveals modified expression of chloroplast genome
In this study we analyzed the effects of CRY2 over-expression on chloroplast genome transcription of tomato, by developing and using a tiling array. This array containing about 90,000 overlapping probes (5-nt resolution) is a versatile tool for global functional studies of tomato cp genome. We profi...
ORGANISM(S): Lycopersicon esculentum 
2016-06-24 | E-MTAB-1757 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Zea mays chloroplast extracts using antibodies raised against OE17 and OE23 chloroplast targeted proteins
OE17 and OE23 are chloroplast targeted proteins. RNA co-immunoprecipitation was performed using antibodies raised against these proteins. RNA from the pellet and from the supernatent for each pulldown was labeled with different fluoro-dyes.
ORGANISM(S): Zea mays 
2006-09-01 | E-MEXP-784 | biostudies-arrayexpress
TranscriptomicsRNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout
In this study, we have characterized a putative chloroplast ribosome assembly factor. To elucidate transcriptional responses caused by decreased chloroplast function, we have measured the transcriptome of wild-type and knock-down seedlings.
ORGANISM(S): Arabidopsis thaliana 
2018-08-16 | E-MTAB-6866 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Zea mays chloroplast extracts prepared from wild type and CRP1-deficient tissue
Identification of target transcripts for the putative chloroplast RNA binding protein CRP1 in Zea mays. CRP1 was immunoprecipitated from a chloroplast extract. Chloroplast extracts were prepared from WT and CRP1-deficient tissue. RNA from the pellet and from the supernatant for each pulldown was lab...
ORGANISM(S): Zea mays 
2005-08-01 | E-MEXP-282 | biostudies-arrayexpress
ProteomicsThe tomato chloroplast stromal proteome compendium elucidated by leveraging a plastid protein-localization prediction Atlas
Tomato (Solanum lycopersicum) is a model species for studying fruit development, wounding, herbivory, and pathogen attack. Despite tomato’s world-wide economic importance and the role of chloroplasts as metabolic hubs and integrators of environmental cues, little is known about the stromal proteome ...
ORGANISM(S): Solanum lycopersicum 
2023-10-24 | PXD035944 | Pride
Lumenal proteins Protein homeostasis Proteomics Chloroplast Solanum lycopersicum Redox Leucine aminopeptidase Stroma 
ProteomicsThe Thylakoid Protein NTA1 Is An Assembly Factor of Cytochrome b6f Complex Essential for Chloroplast Development in Arabidopsis
The cytochrome b6f (Cyt b6f) complex is a multisubunit protein complex in chloroplast thylakoid membranes required for photosynthetic electron transport. Here we report the isolation and characterization of the new tiny albino (nta1) mutant in Arabidopsis, which had severe defects in Cyt b6f accumul...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2023-02-22 | PXD038714 | Pride
Albino mutant Assembly factor Cytochrome b6f complex Chloroplast development 
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