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ProteomicsMycobacterium tuberculosis extracellular vesicle proteome
Tuberculosis is a common infectious disease mostly caused by Mycobacterium tuberculosis. M. tuberculosis have been shown to release extracellular vesicles (EVs) containing immunologically active molecules. However, only limited number of proteins has been identified in M. tuberculosis EVs. We presen...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2015-07-30 | PXD001160 | Pride
Exosomes Mycobacterium tuberculosis Extracellular vesicles Outer membrane vesicles Bacteria 
ProteomicsQuantitative proteomic analysis of trypsin-treated extracellular vesicles to evaluate non-vesicular contaminants and surface vesicular proteins.
Extracellular vesicles (EVs) are lipid bilayered vesicles released into extracellular milieu by most of cells. Currently, various purification methods of EVs have been established but most of studies use ultracentrifugation-based purification of EVs. However, these methods have the problem of co-pur...
ORGANISM(S): Homo sapiens (Human) 
2021-08-30 | PXD001355 | Pride
Non-vesicular contaminants Quantitative proteomics Extracellular vesicles Trypsin treatment 
UnknownHarnessing an RNA-mediated chaperone for the assembly of influenza hemagglutinin in an immunologically relevant conformation.
Not available
S-EPMC5901386 | biostudies-literature
TranscriptomicsHrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin
This SuperSeries is composed of the following subset Series: GSE37697: Antisense Transcripts in Mutant Strains GSE40451: Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin [MNase-Seq] Refer to individual Series
ORGANISM(S): Schizosaccharomyces pombe 
2012-10-02 | E-GEOD-40453 | biostudies-arrayexpress
UnknownDominant role of splenic marginal zone lipid rafts in the classical complement pathway against S. pneumoniae.
Not available
S-EPMC6733876 | biostudies-literature
UnknownIntegrative and comparative genomic analysis of lung squamous cell carcinomas in East Asian patients.
Not available
S-EPMC4062710 | biostudies-literature
TranscriptomicsGene expression in S1 panicles of Ubi1:AtJMT transgenic plants and drought-treated nontransgenic rice plants
To identify genes that are regulated by MeJA and drought, global expression profilings were performed on panicles from Ubi1:AtJMT, drought-treated NT, and untreated NT plants. The underlying assumption of this approach was that high levels of MeJA produced either by overexpression of AtJMT in the tr...
ORGANISM(S): Oryza sativa 
2009-07-09 | E-GEOD-14508 | biostudies-arrayexpress
GenomicsHrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin [MNase-Seq]
We report that the Schizosaccharomyces pombe CHD remodeler, Hrp3, is a global regulator that drives higher-order chromatin structure and genomic stability. The loss of Hrp3 resulted in nucleosome perturbation across the chromosome, and the production of antisense transcripts in the hrp3M-bM-^HM-^F c...
ORGANISM(S): Schizosaccharomyces pombe 
2012-10-02 | E-GEOD-40451 | biostudies-arrayexpress
ProteomicsCryptococccus Rav1-mCherry LC-MS/MS
we performed in vivo pull-down experiment using the rav1Δ::RAV1-mCherry strain and RFP-trap agarose beads to precipitate Rav1-mCherry protein and its interacting partners.
ORGANISM(S): Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) (Filobasidiella neoformans var. grubii) 
2023-10-02 | PXD042074 | Pride
Rfp trap agarose beads Cryptococcus Rav1-mcherry Lc-ms/ms 
UnknownLPA Gene, Ethnicity, and Cardiovascular Events.
Not available
S-EPMC5241172 | biostudies-literature
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